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. 2004 Nov;53(11):1658–1664. doi: 10.1136/gut.2003.032805

Table 2.

 Primer sequences and temperatures for touchdown protocols

Sense Antisense T 2° target T Step
TNF-α 5′TCT GGC CCA GGC AGT CAG ATC 3′ 5′TCA GCT TGA GGG TTT GCT ACA A 3′ 65°C 59°C 1°C
IL-8 5′ATG ACT TCC AAG CTG GCC GTG GC 3′ 5′TCT CAG CCC TCT TCA AAA ACT TC 3′ 66°C 60°C 1°C
HD-5 5′ GCC ATC CTT GCT GCC ATT C 3′ 5′ AGA TTT CAC ACA CCC CGG AGA 3′ 66°C 60°C 1°C
HD-6 5′ CCT CAC CAT CCT CAC TGC TGT TC 3′ 5′ CCA TGA CAG TGC AGG TCC CAT A 3′ 66°C 60°C 1°C
Lysozyme 5′AAA ACC CCA GGA GCA GTT AAT 3′ 5′CAA CCC TCT TTG CAC AAG CT 3′ 60°C
sPLA2 5′TGA CGA CAG GAA AGG AAG CCG CAC 3′ 5′AGG GAA GAG GGG ACT CAG CAA CGA G 3′ 60°C
HPRT 5′ATC AGA CTG AAG AGC TAT TGT AAT GAC CA 3′ 5′ TGG CTT ATA TCC AAC ACT TCG TG 3′ 66°C 60°C 1°C

T, temperature; TNF-α, tumour necrosis factor α; IL-8, interleukin 8; HD-5, human defensin 5; HD-6, human defensin 6; sPLA2, secretory phospholipase A2; HPRT, human hypoxanthine phosphoribosyltransferase.