Table 4.
Variants of Human papillomavirus types 16, 52 and 58 in immigrant women
| HPV16 | 6 6 9 5 |
6 7 2 1 |
6 8 0 3 |
6 8 5 3 |
6 8 6 2 |
6 8 6 5 |
6 9 7 0 |
6 9 9 4 |
7 0 6 0 |
Class | Country of origin | |
| Reference (NC001526) | A | G | A | C | T | C | C | G | G | E | Germany | |
| DF-23a | - | - | - | - | - | - | - | - | - | E | Nigeria | |
| DF-124 | C | A | - | T | - | T | T | A | T | Af2 | Nigeria | |
| Z-1194 | C | A | - | T | - | T | T | A | T | Af2 | Zaire | |
| HPV52 | 6 7 0 1 |
6 7 0 3 |
6 7 1 1 |
6 7 1 2 |
6 7 6 4 |
6 7 9 4 |
6 8 2 4 |
6 9 1 7 |
6 9 2 0 |
6 9 3 5 |
6 9 4 1 |
Country of origin |
| Reference (X74481) | T | A | A | G | T | A | C | C | T | T | A | United States |
| DF-32 | - | C | G | A | - | - | - | A | G | A | G | Uruguay |
| IS464 (U45923) | - | C | G | A | - | - | - | A | G | A | G | Panama |
| BR0258 (DQ057320) | - | C | G | A | - | - | - | A | G | A | G | Brazil |
| HK1151 (DQ057317) | A | - | - | - | C | G | T | A | G | A | G | China |
| HPV58 | 6 6 4 1 |
6 6 8 8 |
6 6 9 2 |
6 6 9 6 |
6 6 9 7 |
6 7 1 1 |
6 7 9 8 |
6 8 2 2 |
6 8 2 7 |
6 8 2 8 |
7 0 1 6 |
Country of origin |
| Reference (D90400) | G | C | G | G | G | G | A | G | C | A | A | Japan |
| DF-19 | - | A | - | - | - | - | G | A | A | G | - | Ethiopia |
| Bsb-02 (AY101598) | - | A | - | - | - | - | G | A | A | G | - | Brazil |
| IS404 (U45928) | - | - | - | - | - | - | G | A | A | G | - | Mali |
| DF-03a | - | - | A | A | - | A | G | A | A | G | - | Nigeria |
| DF-09 | - | - | A | - | A | A | G | A | A | G | G | Nigeria |
| IS417 (U45929) | - | - | A | - | A | A | G | A | A | G | G | Mali |
| Bsb-08 (AY098920) | - | - | A | - | A | A | G | A | A | G | G | Brazil |
Nucleotide positions, written vertically across the top, refer to nucleotide changes detected within MY09/MY11 L1 regions of HPV16, 52 and 58. Absence of genetic variations relative to the reference HPV type are marked with dashes, whereas presence of variant nucleotides are indicated by the nucleotide corresponding letter. Within each panel, the first column lists the variants identified in the present study (DF-09; DF-19; DF-23; DF-32; DF-124) and those previously described (Bsb-02 and Bsb-08 [44]; IS404, IS417 and IS464 [42]; BR0258 and HK1151 [26]; Z-1194 [59]) with the GeneBank accession number given in parenthesis.
aHPV variants identified in samples with multiple infections by subcloning of MY09/MY11 PCR-products and sequencing analyses.