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. 2006 May 23;8(4):R92. doi: 10.1186/ar1965

Table 1.

Primers for RT-PCR

Gene Primer Sequence RT-PCR product (base pairs) Annealing temperature Cycles Reference
GAPDH up CCACCCATGGCAAATTCCATGGCA 600 60 25 Stratagene
down TCTAGACGGCAGGTCAGGTCCACC
Actin up TGAAGTCTGACGTGGACATC 254 60 25 [7]
down ACTCGTCATACTCCTGCTTG
COL1A2 up AGACCCAAGGACTATGAAGT 509 55 25 [NCBI: NM_000089]
down ACATCATTAGAGCCCTGTAG
COL2A1 up CATCTGGTTTGGAGAAACCATC 606 60 37 [NCBI: J00116]
down GCCCAGTTCAGGTCTCTTAG
COL3A1 up GATGGGGTCAAATGAAGGTGA 546 60 25 [NCBI: NM_000090]
down GCAGATGGGCTAGGATTCAAA
COL10A1 up CCTCTTGTTAGTGCCAACCAG 424 60 37 [NCBI: X98568]
down GAGCCACTAGGAATCCTGAG
Aggrecan up ACTTCCGCTGGTCAGATGGA 111 55 37 [8]
down TCTCGTGCCAGATCATCACC
TGF-β1 up CAGAAATACAGCAACAATTCCTGG 187 60 37 Stratagene
down TTGCAGTGTGTTATCCGTGCTGTC
BMP-7 up TTTGGGGCCAAGTTTTTCTG 410 60 37 [9]
down ACAGGAACTTCCGGGTCAAT
BMP-2 up GGGAAAACAACCCGGAGATT 503 60 37 [NCBI: NM_001200]
down TTAAGGCGTTTCCGCTGTTT
FGF-2 up TACAACTTCAAGCAGAAGAG 283 60 37 [10]
down CAGCTCTTAGCAGACATTGG
VEGF up AAGTGGTCCCAGGCTGCA 296 60 37 [NCBI: AY047581]
down ATCTCTCCTATGTGCTGGCC
IL-1 up AAGCAGCCATGGCAGAAGTA 482 60 37 [NCBI: M15840]
down GAACACCACTTGTTGCTCCA
TNF- up GAGTGACAAGCCTGTAGCCCATGTTGTAGCA 444 60 37 Clontech
down GCAATGATCCCAAAGTAGACCTGCCCAGACT

The sources for sequences are given in the last column, the numbers in brackets refer to the literature, and the other numbers indicate the codes from sequences in PubMed. BMP, bone morphogenetic protein; COL, collagen type; FGF, fibroblast growth factor; GAPDH, glucosealdehyde phosphate dehydrogenase; IL, interleukin; RT-PCR, reverse transcription-PCR; TNF, tumor necrosis factor; VEGF, vascular endothelial growth factor.