Table 3.

Partial correlation between covariate and transcription rates

	Intergenic regions				Coding regions
Covariate	Control variable	Partial correlation	Control variables	Partial correlation	Control variable	Partial correlation	Control variables	Partial correlation
H3K9	H4	0.3015	H4 and Seq	0.2507	H4	0.2439	H4 and Seq	0.2038
H3K14	H4	0.2359	H4 and Seq	0.2105	H4	0.4070	H4 and Seq	0.3473
H4	H3K9, H3K14	-0.0656	H3K9, H3K14 and Seq	-0.0344	H3K9, H3K14	-0.3245	H3K9, H3K14 and Seq	-0.2678

The partial correlation between transcription rates and H3 (or H4) acetylation levels while controlling for the effects of H4 (or H3) acetylation and sequence information (Seq).