Table 2.

Classification results (%) for largest 20 functional classes. Values in bold indicate the top performance in each row.

Functional Class	FNC	KNN	L-SVM	RBF-SVM
Mitochondrion	73.9	78.3	57.2	78.7
Cytoskeleton	69.7	74.7	46.7	61.3
Nucleotide metabolism	39.4	33.3	25.9	38.1
Protein targeting, sorting and translocation	58.6	48.6	40.0	47.7
Protein degradation	54.2	54.6	38.6	54.2
Cell growth/morphogenesis	67.5	68.7	44.4	59.7
Lipid, fatty acid and isoprenoid metabolism	31.5	29.9	29.3	34.4
Stress response	57.2	58.7	36.9	55.0
Amino acid metabolism	53.1	43.6	41.0	57.3
Cellular sensing and response	63.1	62.7	47.8	56.8
Protein modification	44.1	39.5	35.3	47.3
Ribosome biogenesis	90.0	94.5	84.8	94.1
RNA processing	50.7	48.4	31.6	47.7
DNA processing	71.0	63.1	39.5	64.7
Transported compounds	73.8	60.4	36.8	68.7
Fungal/microorganismic cell type differentiation	73.5	76.2	45.6	66.0
C-compound and carbohydrate metabolism	76.3	63.9	41.2	69.7
Cell cycle	86.5	79.1	44.3	76.0
RNA synthesis	83.1	64.3	33.7	66.5
Transport routes	88.3	72.1	41.4	66.1
Average	65.27	60.72	42.10	60.51