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. 2006 Nov 6;35(Database issue):D721–D726. doi: 10.1093/nar/gkl811

Table 2.

Ensembl BioMart query parameters for gene structure information

Step Field Settings
1. Dataset Ensembl 39
Homo sapiens genes (NCBI36)
2. Filter Gene: ID List limit EntrezGene ID(s)
3. Output Gene Ensembl Gene ID
Ensembl Peptide ID
Ensembl CDS length
Ensembl Peptide length
Ensembl Transcript count
External references EntrezGene ID
Output format Text, tab separated