Table 3.

Prediction of CNMSs serve as regulatory elements in silico

CNMSs	Method	Motif Name	Recognized Sequence	Motif Function
(GA)n	PlantCARE	GAG-motif	AGAGAGa	part of a light responsive element [35,37]
	PLACE	GAGAGMGSA1	(GA)9	Binding site for GAGA-binding factor, and Gbp is a light-responsive gene [12].
(GAA)n	PlantCARE	TCA-element	aAGAAgaaga	salicylic acid responsive element [39]
(CT)n	PlantCARE	TCCC-motif	TCTCtCT	part of a light responsive element [34,35].
	PLACE	CTRMCAMV35S	TCTCTCTCT	CT-rich motif found in a 60-nt region downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression [36].
(CTT)n		TCA-element	TCtTCTTCTT	salicylic acid responsive element [38]