. Author manuscript; available in PMC: 2007 Jan 25.

Published in final edited form as: J Proteome Res. 2005;4(6):2397–2403. doi: 10.1021/pr050160f

Table 4.

Number of peptide and protein identifications^a from four MCF-7 samples, each containing ∼ 5 000 cells, prepared by the TFE-based protocol and analyzed using LC-MS/MS with a linear ion trap mass spectrometer (LTQ).

	Different peptides	Proteins
#1	305	113
#2	211	85
#3	290	133
#4	179	83

Overlap	82	40

All peptides identified passed the filtering criteria discussed in detail in the experimental section.