Table 1. The sequences of polymerase chain reaction (PCR) primers used in this study.
Peptide/ fragment | Amino acid co-ordinates | Base pair co-ordinates | Forward primer1 | Reverse primer1 | Product size (bp) |
---|---|---|---|---|---|
p1 | 1–12 | 1–36 | AGGGTACCAACATCTTTGAG | TGTCTAGAGGGGCGGAGTGG | 58 |
p306 | 306–320 | 916–960 | AGGGTACCGATGGTCACTACCAA | TGTCTAGACTGGGCATCCACACA | 79 |
p1579 | 1579–1591 | 4735–4773 | AGGGTACCGACTCCCCGCTGGTG | TGTCTAGAGAAGCTGCAGGCCTC | 72 |
p1672 | 1672–1711 | 5014–5133 | AGGGTACCCAGAAGAGCTTCGAA | TGTCTAGAACAGCAGGAATCATT | 154 |
p1826 | 1826–1836 | 5476–5508 | AGGGTACCGACTTTCCAGGAGAT | TGTCTAGAGGTAATGTCCACAGG | 67 |
p2102 | 2102–2116 | 6304–6348 | AGGGTACCAGTAACTTCTCCATG | TGTCTAGAAAGGCAGTCCTGGTG | 79 |
p2340 | 2340–2359 | 7018–7077 | AGGGTACCCTGCTGGACCAAGTG | TGTCTAGATGTCACACGCTGAGG | 94 |
p2494 | 2494–2510 | 7483–7533 | CGGGTACCATGGGGCTTATCAATAG | CGTCTAGATCAGCCTTGGCTCTCTT | 73 |
p2549 | 2549–2560 | 7645–7680 | AGGGTACCTTGGAGCACTCCACA | TGTCTAGAGGCATTCTCCAGTGC | 70 |
p2596 | 2596–2608 | 7786–7824 | AGGGTACCCCCGAAAGCTATGGC | TGTCTAGAAAAAGCATATTGAAC | 73 |
p2695 | 2695–2713 | 8083–8136 | CGGGTACCATGTGCTCCTTCTGGT | CGTCTAGATCATGCATCCTTGGCTC | 82 |
p2730 | 2730–2743 | 8188–8229 | AGGGTACCGTTGGACCTGGATTA | TGTCTAGATTTGCTGTAGCTCTT | 82 |
A | 306–520 | 916–1560 | AGGGTACCAACATCTTTGAG | TGTCTAGACTTCTCAGACACACG | 645 |
B | 516–745 | 1546–2235 | ATGGTACCCGTGTGTCTGAGAAG | TGTCTAGAAGAGGCACTGCACTGAGG | 690 |
C | 741–980 | 2221–2940 | AGGGTACCCCTCAGTGCAGTGCC | TGTCTAGACTGAGCAGCCAAGCG | 720 |
D | 976–1225 | 2926–3675 | AGGGTACCCGCTTGGCTGCTCAG | TGTCTAGACTGCTGAACAGTCGT | 750 |
E | 1221–1435 | 3661–4305 | AGGGTACCACGACTGTTCAGCAG | TGTCTAGAAGCATCCTGTCTGGT | 645 |
F | 1436–1711 | 4306–5133 | AGGGTACCCTGGGCTGTGTGAAA | TGTCTAGAACAGCAGGAATCAT | 828 |
β-actin | – | – | GCTCTTTTCCAGCCTTCCTT | CTTCTGCATCCTGTCAGCAA | 177 |
All primers are given in the 5′ to 3′ direction; the underlined sequence is the KpnI site in the forward primer and the XbaI site in the reverse primer.