Table 4.
Transcriptional profile of T cell clone Bpp9
| Gene name | Chromosome | EMBL | Ensembl | Gene group(Ref.) | Repeat frequency | |
|---|---|---|---|---|---|---|
| Group A (novel genes) | NTOG-1 (NM_133718) | 9 | BE034992 | G32328 | Membrane protein (364 aa) | 3 |
| NTOG-9 (NM_145449) | 12 | BE138264 | G21208 | Interferon-induced precursor 6–16 FAM14A (215 aa)10 | 3 | |
| NTOG-10 (T60641) | 17 | BE570229 | G48915 | No description (122 aa) | 2 | |
| Group B (regulatory/signalling) | Ctla2b | 13 | MMCTLA2A | G442S8 | Cysteine protease inhibitor 152 | 1 |
| MAPKKKK3 | 17 | BC005781 | G24242 | Similar to mitogen-activated protein kinase kinase kinase kinase 353 | ||
| m-Numb | 12 | MU70674 | G21224 | Notch antagonist31 | 1 | |
| Peli1 | 11 | AC091421 | G20134 | Pellino 129,30 | 1 | |
| Rap1b | 10 | BF162089 | G20200 | GTP-binding protein35–38 | 1 | |
| Zfp313 | 2 | AL589870 | G6418 | Zinc-finger protein 3139 | 1 | |
| Group C (frequent DPs) | Gzma | 13 | AW494114 | G23132 | Granzyme A25–28 | 5 |
| Gzmb | 14 | BC002085 | G15437 | Granzyme B | 8 | |
| Gzmc | 13 | MMB10 | G15441 | Granzyme C | 1 | |
| Gzmg | 14 | MMGRAG | G40284 | Granzyme G | 4 | |
| Mcpt8 | 14 | MMCP8SP | G22157 | Mast cell protease 8 precursor | 3 | |
| Group D (miscellaneous genes) | Esm-1 | align="left"16 | AK002913 | G42379 | Endothelial cell-specific molecule 1 precursor44 | 1 |
| Ftl1 | 13 | MMFERLA | G50708 | Ferritin light chain 140 | 1 | |
| L37A | 2 | HSPD27388 | G50421 | 60S ribosomal protein L37A48 | 1 | |
| Lum | 10 | S79461 | G36446 | Lumican precursor27,41,42 | 1 | |
| Mt1 | 8 | MM1265505 | G31765 | Metallothionein-143 | 1 | |
| Prg | 10 | BI080584 | G20077 | Serglycan54 | 1 | |
| Pth | 7 | RNCPTHRA | G44579 | Parathyrin39 | 1 | |
| RL44 | 6 | BE137621 | G49751 | Ribosomal protein49,50 | 2 | |
| Rpn2 | 2 | AK004968 | G27642 | Ribophorin II46,47 | 1 | |
| Sdf4 | 4 | BC005715 | G29076 | Calcium binding precursor Cab4545 | 1 | |
| Slc17ab | 7 | AK013772 | G30500 | Solute carrier family 17 member 655 | 1 | |
| Tcb1 | 6 | MMTCBXH | G29878 | T cell receptor beta-2 chain C region | 2 | |
| Ubiquitin | 4 | BM123337 | G45373 | Ribosomal protein56 | 3 |
Group E: Unassigned Bpp9 matches to chromosomes Ensembl/EMBL.
chr1: AL645950; chr2: AC116592, AK004968, AL589870, AL590373; chr 6: AI653760, AQ974933, MMPPC3, TVB6; chr7: BC002085; chr 8: BM123337; chr 9: AL596383 (×2), AZ497263 (×2); chr 10: AZ996521; chr 11: AZ017265; chr 12: AC055772, BE138264 (×2); chr 17: AC008823 AF092750.