Table 2.
Identification of gag mimetope peptides presented via αhDECp24
Patient | Reactive p24 peptides pool | Active p24 peptide in pool |
HLA class I | ||||||
---|---|---|---|---|---|---|---|---|---|
No. | Sequence | A1 | A2 | B1 | B2 | C1 | C2 | ||
LB02 | I | 10 | FVEKAFSPEVIPMFSAL | 2010 | 3201 | 4001 | 5701 | 0304 | 0602 |
LB03 | III | 5 | AGTTSTLQEQIGWMT | 0202 | 3601 | 5301 | 5701 | 0401 | 0401 |
6 | STLQEQIGWMTNNPP | ||||||||
LB04 | I | 10 | EKAFSPEVIPMFSAL | 0301 | 1101 | 3501 | 5701 | 0401 | 0401 |
LB05 | III | 5 | AGTTSTLQEQIGWMT | 3101 | 3303 | 5801 | 7801 | 0701 | 1601 |
6 | STLQEQIGWMTNNPP | ||||||||
IV | 7 | FRDYVDRFYKTLRAE | |||||||
8 | VDRFYKTLRAEQASQ | ||||||||
LB06 | III | 9 | NPPIPVGEIYKRWII | 2301 | 7401 | 0801 | 1801 | 0304 | 0202 |
10 | PVGEIYKRWIILGLN | ||||||||
LB07 | III | 11 | IYKRWWIILGLNKIVR | 0301 | 1101 | 0702 | 0733 | 0702 | 0704 |
V | 8 | EMMTACQGVGGPGHK | |||||||
9 | ACQGVGGPGHKARVL | ||||||||
LB10 | II | 10 | AAEWDRLHPVHAGPI | 2402 | 6601 | 1503 | 3501 | 0401 | 0401 |
11 | DRLHPVHAGPIAPGQ | ||||||||
LB11 | II | 9 | INEEAAEWDRLHPVH | 3201 | 3201 | 1402 | 4002 | 0802 | 0202 |
10 | AAEWDRLHPVHAGPI |
As in Table 1 and Fig. 4, gag peptides were identified that were recognized by CD8+ T cells after proliferation in response to αDEC p24. We first identified a pool of gag peptides (column 2), and then the peptide pool was broken down into individual peptides to identify the optimal mimetope (columns 3 and 4). After typing for HLA class I alleles at HLA-A, B, and C loci for each patient, we were able to identify from the Los Alamos database (www.hiv.lanl.gov/content/index) known peptide sequences that are presented on a corresponding HLA product in bold and, in one case (patient LB07), a second peptide (underlined).