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. 2007 Jan 17;104(4):1289–1294. doi: 10.1073/pnas.0610383104

Table 2.

Identification of gag mimetope peptides presented via αhDECp24

Patient Reactive p24 peptides pool Active p24 peptide in pool
HLA class I
No. Sequence A1 A2 B1 B2 C1 C2
LB02 I 10 FVEKAFSPEVIPMFSAL 2010 3201 4001 5701 0304 0602
LB03 III 5 AGTTSTLQEQIGWMT 0202 3601 5301 5701 0401 0401
6     STLQEQIGWMTNNPP
LB04 I 10 EKAFSPEVIPMFSAL 0301 1101 3501 5701 0401 0401
LB05 III 5 AGTTSTLQEQIGWMT 3101 3303 5801 7801 0701 1601
6     STLQEQIGWMTNNPP
IV 7 FRDYVDRFYKTLRAE
8     VDRFYKTLRAEQASQ
LB06 III 9 NPPIPVGEIYKRWII 2301 7401 0801 1801 0304 0202
10     PVGEIYKRWIILGLN
LB07 III 11 IYKRWWIILGLNKIVR 0301 1101 0702 0733 0702 0704
V 8 EMMTACQGVGGPGHK
9     ACQGVGGPGHKARVL
LB10 II 10 AAEWDRLHPVHAGPI 2402 6601 1503 3501 0401 0401
11     DRLHPVHAGPIAPGQ
LB11 II 9 INEEAAEWDRLHPVH 3201 3201 1402 4002 0802 0202
10     AAEWDRLHPVHAGPI

As in Table 1 and Fig. 4, gag peptides were identified that were recognized by CD8+ T cells after proliferation in response to αDEC p24. We first identified a pool of gag peptides (column 2), and then the peptide pool was broken down into individual peptides to identify the optimal mimetope (columns 3 and 4). After typing for HLA class I alleles at HLA-A, B, and C loci for each patient, we were able to identify from the Los Alamos database (www.hiv.lanl.gov/content/index) known peptide sequences that are presented on a corresponding HLA product in bold and, in one case (patient LB07), a second peptide (underlined).