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. 2007 Jan 10;104(3):790–795. doi: 10.1073/pnas.0605911104

Table 1.

NMR and refinement statistics for calculated structures

Statistics Parallel-dimer layers Uneven-dimer columns Antiparallel-dimer layers Antiparallel-monomer columns
NMR distance constraints
    Total intermolecular C–C constraints* 94 96 102 81
        Constraints in class −3.5 Å 63 70 70 55
        Constraints in class 3.5–4.5 Å 21 20 20 22
        Constraints in class 4.5–5.5 Å 6 4 8 2
        Constraints in class 5.5–7.0 Å 4 2 4 4
Structure statistics
    Violations, mean and SD
        Distance constraints, Å 0.9 ± 1.0 1.6 ± 1.1 1.6 ± 1.6 1.7 ± 1.6
        Distance constraints ± 50%, Å 0.2 ± 0.4 0.6 ± 0.7 0.8 ± 1.2 0.8 ± 1.1
    Deviations from idealized geometry
        Bond lengths, Å 0.01 0.01 0.01 0.01
        Bond angles, ° 0.6 0.6 0.6 0.6
    Average pairwise rmsd, ŧ
    Heavy 2.99 ± 0.63 3.03 ± 0.64 3.41 ± 0.70 6.21 ± 2.07
    Backbone 0.20 ± 0.06 0.19 ± 0.05 0.63 ± 0.27 3.26 ± 1.82

*The numbers of the distance constraints for the stacking molecules in the central part in the optimized assembly structure consisting of 18 molecules.

Average values of differences between experimental distances rj,k,l,m and those in optimized structures, rj,k,l,mopt.

Averages of the deviations from the error bounds defined by rj,k,l,mopt − 1.5rj,k,l,m (for 1.5rj,k,l,m < r j,k,l,mopt), 0 (for 0.5rj,k,l,mrj,k,l,mopt ≤ 1.5rj,k,l,m), and 0.5rj,k,l,mr j,k,l,mopt (for r j,k,l,mopt < 0.5rj,k,l,m).

§Pairwise rmsd was calculated for the 10 lowest-energy structures of 200 calculations.