Table 8.

Predictions of RNA secondary structures by RNAZ (p-value > 90%)

		Distal	10 kb	1 kb	exon	intron
Found in human AND chimp (1436)	Distal	418 (29.1%)	64(4.5%)	17(1.2%)	62(4.3%)	184 (12.8%)
	10 kb	70 (4.9%)	19(1.3%)	3(0.2%)	19(1.3%)	24(1.7%)
	1 kb	30 (2.1%)	8(0.6%)	4(0.3%)	3(0.2%)	1(0.1%)
	exon	164 (11.4%)	61(4.2%)	15(1.0%)	6(0.4%)	6(0.4%)
	intron	226(15.7%)	20(1.4%)	3(0.2%)	5(0.3%)	4(0.3%)
		Distal	10 kb	1 kb	Exon	Intron
Found in human AND mouse (241)	Distal	32(13.3%)	2(0.8%)	2(0.8%)	39(16.2%)	11(4.6%)
	10 kb	4(1.7%)	0(0.0%)	0(0.0%)	15(6.2%)	0(0.0%)
	1 kb	2(0.8%)	1(0.4%)	1(0.4%)	2(0.8%)	0(0.0%)
	exon	71(29.5%)	32(13.3%)	5(2.1%)	2(0.8%)	3(1.2%)
	intron	9(3.7%)	3(1.2%)	1(0.4%)	3(1.2%)	1(0.4%)
		Distal	10 kb	1 kb	Exon	Intron
Found in human AND chimp AND rodents (234)	Distal	31(13.2%)	2(0.9%)	2(0.9%)	38(16.2%)	10(4.3%)
	10 kb	4(1.7%)	0(0.0%)	0(0.0%)	14(6.0%)	0(0.0%)
	1 kb	2(0.9%)	1(0.4%)	1(0.4%)	1(0.4%)	0(0.0%)
	exon	70(29.9%)	32(13.7%)	5(2.1%)	2(0.9%)	3(1.3%)
	intron	9(3.8%)	2(0.9%)	1(0.4%)	3(1.3%)	1(0.4%)
		Distal	10 kb	1 kb	exon	Intron
Found in human AND in chimp NOT in rodents (1202)	Distal	387(32.2%)	62(5.2%)	15(1.2%)	24(2.0%)	174 (14.5%)
	10 kb	66(5.5%)	19(1.6%)	3(0.2%)	5(0.4%)	24(2.0%)
	1 kb	28(2.3%)	7(0.6%)	3(0.2%)	2(0.2%)	1(0.1%)
	exon	94(7.8%)	29(2.4%)	10(0.8%)	4(0.3%)	3(0.2%)
	intron	217(18.1%)	18(1.5%)	2(0.2%)	2(0.2%)	3(0.2%)
		Distal	10 kb	1 kb	exon	Intron
Found in human AND in chimp NOT in rodents, and NOT present in databases (1073)	Distal	353(33.1%)	56(5.2%)	13(1.2%)	22(2.1%)	151 (14.1%)
	10 kb	57(5.3%)	15(1.4%)	2(0.2%)	5(0.5%)	20(1.9%)
	1 kb	24(2.2%)	7(0.7%)	3(0.3%)	1(0.1%)	1(0.1%)
	exon	83(7.7%)	24(2.2%)	9(0.8%)	2(0.2%)	3(0.3%)
	intron	196 (18.3%)	17(1.6%)	2(0.2%)	2(0.2%)	3(0.3%)