TABLE 1.
ST complex, ST, and allele distribution among C. jejuni and C. coli isolatesa
| ST complex | ST | Allele(s)a
|
Species | No. of isolates
|
||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| aspA | glnA | gltA | glyA | pgm | tkt | uncA | Human
|
Cattle yr 2003c | Poultry yr 2003c | |||||
| Yr 1996 | Yr 2002b | Yr 2003c | ||||||||||||
| ST-21 | 21 | 2 | 1 | 1 | 3 | 2 | 1 | 5 | C. jejuni | 1 | 1 | |||
| 50 | 2 | 1 | 12 | 3 | 2 | 1 | 5 | C. jejuni | 6 | 11 (4) | 33 (25) | 5 | ||
| 53 | 2 | 1 | 21 | 3 | 2 | 1 | 5 | C. jejuni | 4 | |||||
| 451 | 2 | 1 | 2 | 3 | 2 | 3 | 5 | C. jejuni | 1 | 1 | ||||
| 883 | 2 | 17 | 2 | 3 | 2 | 1 | 5 | C. jejuni | 1 | 1 | 3 | |||
| 1943 | 2 | 1 | 1 | 3 | 2 | 226 | 5 | C. jejuni | 1 | |||||
| 1948 | 2 | 71 | 12 | 3 | 2 | 1 | 5 | C. jejuni | 1 | |||||
| 1949 | 2 | 1 | 5 | 3 | 2 | 25 | 5 | C. jejuni | 1 | |||||
| 1952 | 2 | 1 | 12 | 3 | 1 | 1 | 5 | C. jejuni | 1 | |||||
| 1969 | 2 | 234 | 2 | 3 | 2 | 1 | 5 | C. jejuni | 1 | 1 | ||||
| ST-22 | 22 | 1 | 3 | 6 | 4 | 3 | 3 | 3 | C. jejuni | 10 | ||||
| 1947 | 1 | 94 | 6 | 4 | 3 | 3 | 3 | C. jejuni | 2 | |||||
| 1966 | 1 | 3 | 6 | 4 | 3 | 276 | 3 | C. jejuni | 1 (1) | |||||
| ST-45 | 11 | 48 | 7 | 10 | 4 | 1 | 7 | 1 | C. jejuni | 3 | 2 (1) | |||
| 45 | 4 | 7 | 10 | 4 | 1 | 7 | 1 | C. jejuni | 23 | 31 (8) | 31 (27) | 2 | 22 | |
| 137 | 4 | 7 | 10 | 4 | 42 | 7 | 1 | C. jejuni | 3 | 8 (3) | 6 (2) | |||
| 230 | 4 | 7 | 41 | 4 | 42 | 7 | 1 | C. jejuni | 3 | 9 (6) | ||||
| 334 | 4 | 7 | 40 | 4 | 42 | 7 | 1 | C. jejuni | 1 (1) | |||||
| 538 | 4 | 7 | 10 | 4 | 42 | 25 | 1 | C. jejuni | 4 (2) | |||||
| 583 | 4 | 7 | 10 | 4 | 42 | 51 | 1 | C. jejuni | 1 | |||||
| 1003 | 8 | 7 | 4 | 4 | 125 | 7 | 1 | C. jejuni | 2 | |||||
| 1326 | 104 | 7 | 10 | 4 | 1 | 7 | 1 | C. jejuni | 2 | |||||
| 1944 | 4 | 7 | 10 | 4 | 320 | 7 | 1 | C. jejuni | 3 | |||||
| 1950 | 4 | 7 | 197 | 4 | 1 | 7 | 1 | C. jejuni | 1 | |||||
| 1958 | 4 | 7 | 41 | 4 | 42 | 7 | 177 | C. jejuni | 1 (1) | |||||
| 1964 | 4 | 7 | 143 | 4 | 1 | 7 | 1 | C. jejuni | 1 (1) | |||||
| 1971 | 4 | 233 | 10 | 4 | 1 | 7 | 1 | C. jejuni | 1 | |||||
| 1973 | 4 | 7 | 10 | 266 | 1 | 7 | 1 | C. jejuni | 1 | |||||
| ST-48 | 48 | 2 | 4 | 1 | 2 | 7 | 1 | 5 | C. jejuni | 5 (3) | ||||
| 475 | 2 | 4 | 1 | 4 | 19 | 62 | 5 | C. jejuni | 2 | 1 (1) | 1 | |||
| 918 | 2 | 4 | 1 | 4 | 19 | 1 | 5 | C. jejuni | 1 | |||||
| ST-52 | 52 | 9 | 25 | 2 | 10 | 22 | 3 | 6 | C. jejuni | 1 | 1 (1) | 1 | 1 | |
| ST-61 | 61 | 1 | 4 | 2 | 2 | 6 | 3 | 17 | C. jejuni | 2 | ||||
| ST-206 | 206 | 2 | 21 | 5 | 37 | 2 | 1 | 5 | C. jejuni | |||||
| 46 | 2 | 21 | 5 | 3 | 2 | 1 | 5 | C. jejuni | 1 | |||||
| 122 | 6 | 4 | 5 | 2 | 2 | 1 | 5 | C. jejuni | 1 | |||||
| 227 | 2 | 4 | 5 | 2 | 2 | 1 | 5 | C. jejuni | 1 | |||||
| 572 | 62 | 4 | 5 | 2 | 2 | 1 | 5 | C. jejuni | 1 | |||||
| ST-257 | 824 | 9 | 2 | 2 | 2 | 11 | 5 | 6 | C. jejuni | 1 | ||||
| ST-283 | 283 | 2 | 7 | 40 | 4 | 42 | 51 | 1 | C. jejuni | |||||
| 267 | 4 | 7 | 40 | 4 | 42 | 51 | 1 | C. jejuni | 2 | 1 | ||||
| 383 | 4 | 7 | 12 | 4 | 42 | 51 | 1 | C. jejuni | 1 | |||||
| ST-353 | 353 | 7 | 17 | 5 | 2 | 10 | 3 | 6 | C. jejuni | 1 | ||||
| 1953 | 7 | 17 | 2 | 2 | 86 | 3 | 1 | C. jejuni | 1 | |||||
| ST-446 | 446 | 47 | 55 | 5 | 10 | 11 | 68 | 8 | C. jejuni | |||||
| 450 | 47 | 55 | 5 | 10 | 11 | 48 | 8 | C. jejuni | 1 | |||||
| ST-574 | 574 | 7 | 53 | 2 | 10 | 11 | 3 | 3 | C. jejuni | |||||
| 305 | 9 | 53 | 2 | 10 | 11 | 3 | 3 | C. jejuni | 1 | |||||
| ST-607 | 607 | 8 | 2 | 5 | 53 | 11 | 3 | 1 | C. jejuni | |||||
| 1716 | 8 | 2 | 5 | 62 | 11 | 5 | 1 | C. jejuni | 1 | |||||
| 1915 | 8 | 2 | 5 | 53 | 11 | 3 | 6 | C. jejuni | 1 | |||||
| Yr 1996 | Yr 2002b | Yr 2003c | ||||||||||||
| ST-658 | 658 | 2 | 4 | 2 | 4 | 19 | 3 | 6 | C. jejuni | 1 (1) | ||||
| 1395 | 1 | 4 | 2 | 4 | 185 | 3 | 6 | C. jejuni | 1 | |||||
| 1967 | 2 | 198 | 2 | 3 | 19 | 68 | 6 | C. jejuni | 2 (2) | |||||
| ST-677 | 677 | 10 | 81 | 50 | 99 | 120 | 76 | 52 | C. jejuni | 12 | 11 (8) | 5 (5) | ||
| 794 | 10 | 81 | 50 | 87 | 120 | 76 | 52 | C. jejuni | 4 | 3 (3) | 2 (1) | 1 | ||
| ST-692 | 692 | 37 | 52 | 57 | 26 | 127 | 29 | 23 | C. jejuni | |||||
| 1954 | 37 | 106 | 4 | 131 | 127 | 29 | 23 | C. jejuni | 1 | |||||
| ST-828 | 828 | 33 | 39 | 30 | 82 | 104 | 43 | 17 | C. coli | |||||
| 854 | 33 | 38 | 30 | 82 | 104 | 43 | 17 | C. coli | 2 | |||||
| 1156 | 33 | 39 | 30 | 79 | 104 | 64 | 17 | C. coli | 1 | |||||
| 1413 | 33 | 38 | 30 | 82 | 104 | 117 | 17 | C. coli | 1 | |||||
| 1585 | 33 | 39 | 30 | 82 | 189 | 43 | 17 | C. coli | 1 | |||||
| 1625 | 33 | 39 | 30 | 82 | 104 | 47 | 139 | C. coli | 1 | |||||
| 1946 | 53 | 39 | 30 | 82 | 104 | 44 | 17 | C. coli | 1 | |||||
| 1957 | 33 | 39 | 65 | 79 | 104 | 35 | 17 | C. coli | 1 | |||||
| 1965 | 159 | 236 | 30 | 78 | 104 | 43 | 17 | C. coli | 1 (1) | |||||
| ST-1034 | 1034 | 2 | 61 | 4 | 64 | 74 | 25 | 23 | C. jejuni | |||||
| 1951 | 2 | 61 | 4 | 64 | 321 | 7 | 23 | C. jejuni | 1 | |||||
| 1956 | 2 | 59 | 4 | 27 | 128 | 25 | 23 | C. jejuni | 1 (1) | |||||
| ST-1287 | 1287 | 84 | 106 | 29 | 28 | 74 | 136 | 90 | C. jejuni | |||||
| 945 | 84 | 106 | 29 | 28 | 136 | 1 | 35 | C. jejuni | 1 (1) | 2 (2) | ||||
| ST-1332 | 1332 | 2 | 1 | 29 | 28 | 58 | 25 | 58 | C. jejuni | 1 | ||||
| Unassigned | 58 | 19 | 24 | 23 | 20 | 26 | 16 | 15 | C. jejuni | 5 | ||||
| 586 | 1 | 2 | 42 | 4 | 98 | 58 | 34 | C. jejuni | 1 | |||||
| 1080 | 10 | 2 | 107 | 137 | 120 | 76 | 1 | C. jejuni | 1 | 1 | ||||
| 1367 | 10 | 119 | 50 | 126 | 171 | 194 | 112 | C. jejuni | 2 (1) | |||||
| 1525 | 2 | 59 | 4 | 27 | 128 | 7 | 23 | C. jejuni | 1 (1) | |||||
| 1759 | 7 | 112 | 5 | 10 | 11 | 67 | 6 | C. jejuni | 2 | |||||
| 1945 | 7 | 78 | 42 | 264 | 106 | 12 | 8 | C. jejuni | 1 | |||||
| 1955 | 18 | 235 | 72 | 100 | 116 | 103 | 6 | C. jejuni | 1 | |||||
| 1959 | 27 | 2 | 22 | 104 | 319 | 86 | 16 | C. jejuni | 1 | |||||
| 1960 | 161 | 33 | 22 | 104 | 134 | 109 | 16 | C. jejuni | 1 | |||||
| 1961 | 76 | 22 | 165 | 98 | 146 | 269 | 16 | C. jejuni | 1 | |||||
| 1962 | 55 | 172 | 21 | 49 | 125 | 83 | 51 | C. jejuni | 1 | |||||
| 1963 | 7 | 2 | 5 | 10 | 22 | 37 | 1 | C. jejuni | 1 (1) | |||||
| 1968 | 33 | 39 | 30 | 79 | 113 | 47 | 178 | C. coli | 1 (1) | |||||
| 1970 | 37 | 29 | 75 | 48 | 126 | 5 | 23 | C. jejuni | 1 | |||||
| 1972 | 7 | 71 | 5 | 62 | 11 | 67 | 1 | C. jejuni | 1 | |||||
| 1974 | 160 | 84 | 27 | 267 | 11 | 3 | 5 | C. jejuni | 1 | |||||
a
Alleles and STs first described in this study are shown in boldface type.
b
Numbers in parentheses are numbers of isolates included in the epidemiological case-control study conducted during the seasonal peak in 2002 by Schönberg-Norio et al. (19, 20).
c
All isolates from cattle and poultry were collected during the seasonal peak from July to September, as were numbers of isolates given in parentheses for isolates collected from humans in 2003.