TABLE 2.
Locus | Accession no. | Primer function | Primer | Sequence (5′-3′) |
---|---|---|---|---|
ilvC | AF220670 | MLST | ilvC-up | GATCAGGTCACGATGTTAT |
MLST | ilvC-dn | GGTGCATATCCAGCTTCAGT | ||
ddlA | gbU69167 | MLST | ddlA-up | TCAAGTGTGGCTATGGA |
MLST | ddlA-dn | GTAGATGGCTCCATCCTC | ||
glcK | AF442552 | MLST | glcK-up | TGGGCAGAAACTCAAGA |
MLST | glcK-dn | AACACCACCACCGATAAC | ||
pyrE | CP000024 | MLST | pyrE-dn | CGCTTTACGGAGGAACAT |
MLST | pyrE-up | GTCCGTCTGCAGTGATGT | ||
thrS | CP000024 | MLST | thrS-up | ATCACTGAAGATGGAAGC |
MLST | thrS-dn | CCAAGTTTACGGTGGTCA | ||
dnaE | CP000024 | MLST | dnaE-up | GGACTGGGAGCCTGGGAT |
MLST | dnaE-dn | ACTCCCTGCAGCAGACCC | ||
pepO | AJ249396 | MLST | pepOup | AACTCTACCACCCTTATGA |
MLST | pepOdo | GGTTTGTTCCACTTGCTCCAG | ||
tkt | CP000024 | MLST (S. vestibularis) | tkt-up | GCAGCACCAATGGGTTAC |
MLST (S. vestibularis) | tkt-dn | CCAAGTTTACGGTGGTCA | ||
tkt-up2 | CTGGCCACCCTGGTGTGG | |||
. | tkt-dn2 | GGAGCACCGTGAACACCG | ||
tkt-up3 | AATGCTATTCGTTTTCTAGG | |||
tkt-dn3 | TTGAAATCAGCATATACTT | |||
tkt-up4 | CAGGTCATGGTTCAATGCT | |||
tkt-dn4 | TGAATTACGAGTTGCTTG | |||
tkt-dn5 | TTGATATCATTTGAATC | |||
tkt-up6 | ATGGGTGCAGCACCAATGG | |||
tkt-dn6 | ACCAATGACTGTCTTAAC | |||
tkt region | Large region | tkt-dn7 | CTTAGAACCCCATTGACGG | |
Large region | tkt-up8 | GGTGTACGTGAGTTTGCG | ||
Large region | tkt-salup | CTTGGCATTGCTTGACTTCG | ||
Large region | tkt-saldn | CCTTCGATTGAGATTAGTAAC | ||
Large region | tkt-saldn8 | CAAAGGCAGCCTTGTATTCC | ||
Large region | tkt-saldo9 | CAGAACCAGTCGCAATGA | ||
Large region | tkt-vesup | CAAGATTATCTTGTCATCG | ||
Large region | tkt-vesdo | GGCTGGAAAGTCCTTGCATAC | ||
Large region | tkt-vesup9 | GGCAGCAAGTCTACCATGG | ||
Large region | tkt-vesdo9 | GCTTGATACCATGCAGCC- | ||
ilvC region | Large region | ilvB-up3 | GTGGACAGCTCAGTATTATC | |
Large region | ilvC-dn3 | GCTTCTGCTACTGTGTAAG | ||
Large region | ilvC-up5 | CTGAAGAAGATTTGTTTGGTG | ||
Large region | tyrS-do4 | GGTAACATGACAGCAGGTAC | ||
pepO region | Large region | pepO-up6 | GCAGGGTGCGTGCTCTTG | |
Large region | pepO-up4 | ACGCTTACAAGATGATTT | ||
Large region | pepO-dn6 | CTTCTGGAACGATGATTTTATC | ||
Large region | pepO-dn4 | TCATAAGGGTGGTAGAGTT | ||
Large region | pepO-dn5 | TACCAAATAATAACACGATC | ||
Large region | pepO-dn7 | TAGTCATATGAAACTCCT | ||
Large region | pepO-up5 | CTGGAGCAAGTGGAACAAACC | ||
Large region | pepO-up7 | GAAATTTCAGTTGCTCATAG |