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Phylogenetic analyses of individual gp120 sequences, C1 to V5, in (A) SHIV-SF162P3-infected mothers in the study, (B) pair 1 (M1 and B1), and (C) pair 2 (M2 and B2). The maximum likelihood tree is rooted on the SHIV-SF162P3 consensus (P3 CON). P3 CON was created from individual variants cloned and sequenced from the challenge SHIV-SF162P3 stock. Also noted on the phylogenetic tree is the SHIV-SF162P3 sequence from the Los Alamos National Laboratory database (P3 LANL).
