TABLE 3.
Amino acid and codon changes in critical positions of the gyrA and parC QRDRs in S. suisa
Strain | CIP MIC (μg/ml) |
gyrA
|
parC
|
||||||
---|---|---|---|---|---|---|---|---|---|
Position 81
|
Position 85
|
Position 79
|
Position 83
|
||||||
Codon | Aa | Codon | Aa | Codon | Aa | Codon | Aa | ||
ATCC | 0.5 | AGT | Ser | GAA | Glu | TCC | Ser | GAT | Asp |
BB1001 | 0.5 | - | - | - | - | - | - | - | - |
BB1002 | 0.5 | - | - | - | - | - | - | - | - |
BB1003 | 0.5 | - | - | - | - | - | - | - | - |
BB1004 | 0.5 | - | - | - | - | - | - | - | - |
BB1005 | 0.5 | - | - | - | - | - | - | - | - |
BB1006 | 2 | - | - | - | - | TTC | Phe | - | - |
BB1007 | 8 | - | - | AAA | Lys | - | - | CAT | His |
BB1008 | 64 | TAT | Tyr | - | - | TAC | Tyr | - | - |
BB1009 | 32 | AAG | Lys | - | - | TAC | Tyr | - | - |
BB1010 | 32 | ATT | Ile | - | - | TAC | Tyr | - | - |
BB1011 | 16 | TTT | Phe | - | - | TAC | Tyr | - | - |
BB1012 | 32 | AAG | Lys | GAC | Asp | TAC | Tyr | - | - |
BB1013 | 64 | AAG | Lys | GAC | Asp | TAC | Tyr | - | - |
BB1014 | 64 | AAG | Lys | GAC | Asp | TAT | Tyr | - | - |
BB1015 | 32 | AAG | Lys | GAC | Asp | TAC | Tyr | - | - |
BB1016 | 32 | AAG | Lys | GAC | Asp | TAC | Tyr | - | - |
BB1017 | 64 | AAG | Lys | GAC | Asp | TAT | Tyr | - | - |
CIP, ciprofloxacin. -, identical to the ATCC strain. Sequence differences are indicated in boldface. Aa, amino acid.