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. 2007 Jan 10;8:10. doi: 10.1186/1471-2105-8-10

Table 1.

Gene Ontology Enrichment of Informative motifs

Process Name Motif 1 Motif 2 Motif 3 Motif 4
protein biosynthesis 0.000 0.082 0.568 1.000
ribosome biogenesis 0.000 0.314 1.000 1.000
response to unfolded protein 0.003 0.268 1.000 1.000
protein folding 0.004 0.178 1.000 1.000
peptidyl-arginine methylation, to asymmetrical-dimethyl arginine 0.015 1.000 1.000 1.000
protein-nucleus export 0.023 1.000 1.000 1.000
adenine metabolism 0.023 1.000 1.000 1.000
response to stress 0.023 1.000 1.000 1.000
pyridoxine biosynthesis 0.030 1.000 1.000 1.000
endothelial cell differentiation 0.030 1.000 1.000 1.000
hormone-mediated signaling 0.038 1.000 1.000 1.000
re-entry into mitotic cell cycle 0.045 1.000 1.000 1.000
protein amino acid prenylation 0.045 1.000 1.000 1.000
transmission of nerve impulse 0.045 1.000 1.000 1.000

negative regulation of calcium-mediated signaling 1.000 0.000 1.000 1.000
Acute phase response genes 1.000 0.000 1.000 1.000
ubiquitin-dependent protein catabolism 0.288 0.001 0.284 1.000
ureteric bud development 1.000 0.005 1.000 1.000
nucleosome assembly 1.000 0.013 0.128 1.000
protein catabolism 1.000 0.015 1.000 1.000
homophilic cell adhesion 0.149 0.017 1.000 0.143
norepinephrine biosynthesis 1.000 0.018 1.000 1.000
protein refolding 1.000 0.027 1.000 1.000
chaperone cofactor dependent protein folding 1.000 0.027 1.000 1.000
N-acetylglucosamine metabolism 1.000 0.036 1.000 1.000
thyroid hormone catabolism 1.000 0.036 1.000 1.000

cellular response to starvation 1.000 1.000 0.000 1.000
negative regulation of Ras protein signal transduction 1.000 1.000 0.000 1.000
RNA processing 1.000 1.000 0.001 1.000
cell glucose homeostasis 1.000 1.000 0.002 1.000
protein amino acid dephosphorylation 0.436 0.494 0.003 0.421
cytokinesis 1.000 1.000 0.003 1.000
nucleocytoplasmic transport 1.000 1.000 0.005 1.000
negative regulation of transcription, DNA-dependent 0.116 1.000 0.007 1.000
somitogenesis 1.000 1.000 0.015 1.000
glycogen metabolism 1.000 1.000 0.015 1.000
thioredoxin pathway 1.000 1.000 0.023 1.000
negative regulation of Wnt receptor signaling pathway 1.000 1.000 0.023
negative regulation of neuron differentiation 1.000 1.000 0.023 1.000
frizzled signaling pathway 1.000 1.000 0.030 1.000
tRNA processing 1.000 1.000 0.030 1.000
regulation of Wnt receptor signaling pathway 1.000 1.000 0.030 1.000
interleukin-2 biosynthesis 1.000 1.000 0.030 1.000
RNA-nucleus export 1.000 1.000 0.037 1.000
Golgi organization and biogenesis 1.000 1.000 0.037 1.000
regulation of transcription, DNA-dependent 0.077 0.166 0.040 1.000

grooming behavior 1.000 1.000 1.000 0.015
medium-chain fatty acid transport 1.000 1.000 1.000 0.022
embryonic placenta development 1.000 1.000 1.000 0.022
catecholamine catabolism 1.000 1.000 1.000 0.022
inflammatory response 0.494 1.000 1.000 0.028
inflammatory response 0.494 1.000 1.000 0.028
embryo implantation 1.000 1.000 1.000 0.029
synaptic vesicle endocytosis 1.000 1.000 1.000 0.029
response to acid 1.000 1.000 1.000 0.036
associative learning 1.000 1.000 1.000 0.036
nitrogen fixation 1.000 1.000 1.000 0.036
regulation of dopamine metabolism 1.000 1.000 1.000 0.036
mesoderm cell differentiation 1.000 1.000 1.000 0.036
regulation of transcription 1.000 1.000 1.000 0.038
vasculogenesis 1.000 1.000 1.000 0.043
fatty acid transport 1.000 1.000 1.000 0.043