TABLE 1.
Summary of all sampled marker fragments
| Marker | Distance in cMa | Position on contig in bpb | Fragment size in bp | Polymorphic sites | Haplotypesc | Best BLASTx hit | Score | |
|---|---|---|---|---|---|---|---|---|
| GBR1843 | 5.5 | OWB | — | 347 | 4 | 4 | Unknown protein P0458E05.14 (Oryza sativa BAC05614) | 233 1.0E-60 |
| GBS0526 | 4.5 | OWB | — | 930 | 9 | 4 | Putative 60S ribosomal protein L38 (O. sativa BAC79676) | 132 1.0E-30 |
| GBS0419 | 2.2 | OWB | — | 371 | 4 | 3 | Putative β-fructofuranosidase (O. sativa BAC05626) | 354 9.0E-97 |
| No1134 | 0.02 | AW | 28,973 29,373 | 401 | 11 | 6 | None | AY661558 |
| Hv-eIF4E | 0 | — | 101,606 | 879 | 12 | 6 | Eukaryotic initiation factor of translation 4E (Hv-eIF4E) | AY661558 |
| fragment 1 | 102,484 | |||||||
| Hv-eIF4E | 0 | — | 103,313 | 1039 | 15 | 7 | Eukaryotic initiation factor of translation 4E (Hv-eIF4E) | AY661558 |
| fragment 2 | 104,351 | |||||||
| Hv-eIF4E | 0 | — | 106,146 | 565 | 12 | 6 | Eukaryotic initiation factor of translation 4E (Hv-eIF4E) | AY661558 |
| fragment 3 | 106,710 | |||||||
| No519 | 0 | — | 107,786 | 499 | 2 | 3 | Monocarboxylic acid transporter-like (Hv-MLL) | AY661558 |
| 108,284 | ||||||||
| No969 | 0 | — | 161,182 | 175 | 2 | 3 | None | AY661558 |
| 161,356 | ||||||||
| GBR1845 | 0.4 | AW | — | 265 | 5 | 4 | Putative cytochrome B5 (O. sativa BAB63673) | 110 8.0E-31 |
| GBR1851 | 0.7 | AW | — | 424 | 5 | 4 | Unknown protein P0518C01.5 (O. sativa BAB63668) | 75 8.0E-13 |
| GBS1020 | 1.0 | AW | — | 1011 | 2 | 3 | Putative cell cycle switch protein (O. sativa BAB63690) | 312 4.0E-89 |
a
Relative to ATG of Hv-eIF4E.
b
Start and end position of the corresponding fragment based on contig AY661558.
c
No. of haplotypes with a frequency >0.02 in the entire collection.