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. 2007 Feb 2;7:11. doi: 10.1186/1471-2148-7-11

Table 1.

Nucleotide composition and AT- and GC-skewnesses of M. sebastis mtDNA sequences for potein-coding, rRNA, tRNA genes and non-coding regions.

Nucleotide Length (bp) A (%) C (%) T (%) G (%) A+T (%) G+C (%) AT-skew GC-skew
Entire sequence 14,407 29.4 9.7 41.1 19.8 70.5 29.5 -0.17 0.34
Protein-coding sequencea 10,254 27.8 10.1 41.8 20.3 69.6 30.4 -0.20 0.34
Codon position 1st 3,418 29.6 9.6 37.3 23.5 66.9 33.1 -0.12 0.42
2nd 3,418 19.8 13.0 46.1 21.1 65.9 34.1 -0.40 0.24
3rd 3,418 34.0 7.5 42.1 16.4 76.1 23.9 -0.10 0.37
Ribosomal RNA gene sequence 1,696 33.1 10.7 38.1 18.1 71.2 28.8 -0.07 0.26
Transfer RNA gene sequence 1,424 32.6 9.8 38.8 18.8 71.4 28.6 -0.09 0.31
Highly repetitive region (HRR) 472 33.9 1.9 41.5 22.7 75.4 24.6 -0.10 0.85
Unassigned region (UAR) 348 33.7 8.6 44.5 13.2 78.2 21.8 -0.14 0.21

aTermination codons were not included.