Abstract
Ovochymase, an extracellular Xenopus laevis egg serine active-site protease with chymotrypsin-like (Phe-X) substrate specificity, is released during egg activation. Molecular cloning results revealed that ovochymase is translated as part of an unusual polyprotein proenzyme. In addition to the ovochymase protease domain at the C terminus of the deduced amino acid sequence, two unrelated serine protease domains were present, each with apparent trypsin-like (Arg/Lys-X) substrate specificity, and thus, they were designated ovotryptase1 (at the N terminus) and ovotryptase2 (a mid domain). Also, a total of five CUB domains were interspersed between the protease domains. The presence of a hydrophobic signal sequence indicated that the polyprotein was secreted. Immunolocalization and Western blot studies of all three proteases showed that they are all present in the perivitelline space of unactivated eggs, apparently as proenzymes processed away from the original polyprotein. Western blot analysis also showed that the vast majority of the proteases in ovary, eggs, and embryos were present as the proenzyme forms, suggesting that the functions of these proteases depend on very limited levels of activation.
Ovochymase, a 30-kDa Xenopus laevis egg serine active-site protease with chymotrypsin-like (Phe-X) substrate specificity, is released from dejellied eggs on activation, suggesting a role in fertilization or early development (1). Chymotrypsin-like protease activity has been found to be associated with fibers within the perivitelline space (extracellular matrix) of unactivated eggs treated briefly with the crude exudate from activated eggs, suggesting that ovochymase exists extracellularly as a proenzyme until activated and released (2). The use of trypsin inhibitors during egg activation prevents the release of ovochymase, suggesting that ovochymase is activated by a trypsin-like protease (1). A protease with a trypsin-like (Arg-X) substrate specificity of 45 kDa has been detected in activated egg exudate along with ovochymase, but its role has not been established (1).
In determining the structure and function of ovochymase, active ovochymase was purified from activated egg exudate, and the N-terminal amino acid sequence was determined (3). This information was used in the current study to obtain the complete ovochymase cDNA sequence. Ovochymase was found to be translated as part of a secreted polyprotein containing two trypsin-like proteases, a highly unusual situation in eukaryotic systems. Antibodies were generated toward each of the proteases for localization studies, revealing that all the proteases were secreted to the egg surface. Also, the majority of the protease proteins were present in the proenzyme forms during all stages of oocyte and embryo development. Thus, limited activation of the enzymes may be important to their function.
MATERIALS AND METHODS
Egg Materials.
The jelly coats of oviposited eggs were removed with mercaptoethanol (4), and egg envelopes and activated egg exudate were collected as described (1). Oocytes for mRNA isolation were obtained from excised ovaries treated with collagenase (5), and oocytes were separated according to stage of development (6).
Molecular Cloning.
Oocytes corresponding to stages I–III were used for mRNA isolation by using a FastTrack mRNA isolation kit (Invitrogen). An oocyte cDNA library was generated from 5 μg of mRNA by using a λZAP-cDNA/Gigapack cloning kit (Stratagene).
A PCR approach was used to clone ovochymase cDNA. Two degenerate primers were designed based on VGGQQAAP, a portion of ovochymase’s N-terminal amino acid sequence as determined by Edman degradation (3), and GDSGGP, the consensus sequence containing the serine residue in the active site of serine proteases from eukaryotic organisms (7): N-terminal primer (N forward), 5′-TNGGNGGCCARCARGCYGCNCC; and serine active-site reverse primer (Ser reverse), 5′-TTCCTGCAGGRGGKCCNCCRGARTCWCC. Primers were synthesized by the University of California, Davis, Protein Structure Laboratory. A portion of the second-strand cDNA synthesis product from the library construction above was used as a template for the PCR by using Taq polymerase (Promega) with 40 cycles of 94°C for 1 min, 50°C for 2 min, and 72°C for 3 min. The PCR product (≈530 bp) was gel purified and inserted into a pCR II vector (TA cloning kit, Invitrogen) for subsequent DNA sequencing. Based on the sequenced obtained, a 3′ extension primer was designed for use in PCR with a T7 vector primer. A specific PCR product (≈260 bp) was identified through Southern hybridization by using a 32P-ATP-labeled Ser reverse primer as a probe. The PCR product was inserted into a pGEM-T vector (Promega) for DNA sequencing. The 3′ sequence was determined to be complete, because it included a stop codon, polyadenylation sequence, and poly(A) tail. The 5′ end of the molecule was obtained through 5′ rapid amplification of cDNA ends (RACE) (8) by using a Marathon cDNA amplification kit from CLONTECH. Total RNA was isolated from Xenopus ovary by using the Stratagene kit, and mRNA was then isolated by using a Oligotex kit from Qiagen (Chatsworth, CA). The gene-specific reverse primer used was 5′-GTGGCGCTTCTTGGAGTTCT, with a PCR of 30 cycles of 94°C for 30 s and 68°C for 4 min with CLONTECH’s Advantage KlenTaq polymerase mix. The resulting product (≈4,000 bp) was sequenced after insertion into a pGEM-T vector. This RACE product did not yield a start Met; therefore, another 5′ RACE PCR was performed by using the reverse primer 5′-CCTGTAGGACTGGGGACAAGT, which gave a product of ≈650 bp containing the start Met. To confirm the sequences obtained by the multiple 5′ RACE products, an overlapping 3′ RACE procedure was performed.
DNA sequencing was performed by using a Sequenase kit (United States Biochemical) or through automated DNA sequencing performed by either the Division of Biological Sciences or the Advanced Plant Molecular Genetics DNA sequencing facilities on the University of California, Davis, campus. Sequences were analyzed with the Genetics Computer Group’s (Madison, WI) sequence analysis software by using default parameters.
RNA Analysis.
Northern blots prepared by standard methods (9), containing mRNA from stage I–III oocytes or total RNA from oocytes representing each oogenesis stage (stages I–VI), were prehybridized at 42°C for 1–2 hr in 50% (vol/vol) formamide/6× SSC (0.15 M sodium chloride/0.015 M sodium citrate, pH 7)/5× Denhardt’s solution (0.02% polyvinylpyrrolidone/0.02% Ficoll/0.02% BSA)/0.5% SDS/100 mg/ml salmon sperm DNA. Hybridization was performed overnight under the same conditions by using [32P]dCTP-incorporated primary PCR ovochymase clone, followed by washing under high stringency conditions in 0.1× SSC/0.1% SDS at 65–70°C.
Reverse transcription–PCR was performed with a Titan One-Step Reverse Transcription–PCR kit from Roche Molecular Biochemicals by using primers to amplify the ovochymase transcript and primers to amplify β-tubulin as a control as described (10).
Ovarian tissue was prepared for in situ hybridization by the method of O’Keefe et al. (11), and probed for ovochymase mRNA by using a digoxigenin-labeled RNA probe as described by the manufacturer (Roche Molecular Biochemicals).
Immunolocalization and Western Blot Analysis.
Polyclonal antibodies to the three proteases were generated toward protease-specific peptides based on the deduced amino acid sequences. These peptides (see Fig. 1A), synthesized by Genosys (The Woodlands, TX), corresponded to amino acids 285–296 (CWGAKQIIRSQSG), 773–782 (CQNEKEQFSI), and 1,311–1,321 (IQNSKKRHYCG). The polypeptides were conjugated to maleimide-activated keyhole limpet hemocyanin (Pierce) by using a protocol provided by the manufacturer and injected intramuscularly into goats or rabbits for antibody production. Peptide-specific antibodies were affinity purified from the collected sera by using columns of peptide coupled to SulfoLink gel (Pierce) and standard methods (12).
For immunolocalization studies, live or methanol-fixed (overnight at 4°C) dejellied eggs were first blocked for 10 min in a solution of 3% (vol/vol) BSA in PBS. This block was followed by a 1.5-hr incubation in anti-protease antibody preparation and 1 hr in fluorescently labeled secondary antibody (Sigma). Labeled eggs were viewed with a Bio-Rad MRC6000 confocal microscope.
For Western blot analysis of proteins (13), samples were separated on SDS/8% PAGE gels followed by electroblotting onto Millipore Immobilon-P membranes. Samples included 10 μl each of concentrated egg exudate or whole-egg lysate prepared by quick freezing four jelly-intact eggs in liquid nitrogen and then dissolving them in 1 ml of hot SDS/PAGE buffer containing general use protease inhibitor cocktail from Sigma [bestatin/leupeptin/aprotinin/4-(2-aminoethyl)benzenesulfonyl fluoride/trans-epoxysuccinyl-l-leucylamido(4-guanidino)butane/EDTA]. The blots were incubated with a 1:500 dilution of anti-protease antibodies, followed by a 1:5,000 dilution of horseradish-peroxidase-conjugated secondary antibodies (Sigma). Antibodies were diluted in Tris-buffered saline/0.1% Tween 20/5% (vol/vol) nonfat dry milk, and wash solutions used the same buffer system without the milk. Peroxidase-reactive bands were visualized by enhanced chemiluminescence (Amersham Pharmacia).
RESULTS
Molecular Cloning.
A 4,628-bp ovochymase cDNA was isolated with an ORF of 4,569 bp, a 5′ untranslated region of 13 bp, and a 3′ untranslated region including a polyadenylation site (AATAAA) starting 7 bp from the end of the stop codon and followed, after an additional 17 bp, by the poly(A) tail. Two possible start codons were present adjacent to each other, but the second one most closely followed Kozak’s rule (14) for translation start sites. On translation, the ORF corresponded to a polypeptide of 1,523 amino acids, with a calculated molecular mass of 167 kDa (Fig. 1A). A psort analysis (15) indicated that the protein possessed a hydrophobic signal sequence for secretion, with a predicted cleavage site after Ala-16. No C-terminal transmembrane region was present, nor was there a furin cleavage site indicative of constitutive secretion (16). With the signal sequence removed, the secreted protein would have a molecular mass of 165 kDa. The actual molecular mass may be larger, depending on the extent of glycosylation of the 11 potential N-linked glycosylation sites and 3 predicted (17) O-linked glycosylation sites (Fig. 1A).
A single transcript of 5.3 kilobases was detected by Northern blotting analysis in mRNA isolated from early-stage oocytes (Fig. 2A), which correlated with the size of the cDNA sequence obtained by cloning, considering that only a small portion of the 5′ untranslated region was sequenced. A blot containing total RNA from stage I–VI oocytes (Fig. 2B) showed that the ovochymase message was first detectable at stage I of oogenesis, peaked at stage IV, and then disappeared at later stages. In situ hybridization confirmed that ovochymase mRNA was produced by the oocytes and not by follicle cells that were also present in oocyte preparations (data not shown). Analysis of various tissues by reverse transcription–PCR showed that the message for ovochymase was specific for ovary, with no message detected in pars recta oviduct, liver, or skeletal muscle (Fig. 2C).
Protease Domain Characterization.
The N-terminal amino acid sequence of the mature ovochymase protease, determined by Edman degradation (3), was found starting at Val-1,294 of the deduced amino acid sequence of the ovochymase cDNA, and the protease domain extended to the end of the ORF. Thus, the ovochymase protease domain represented the C terminus of the molecule. An Arg was found immediately preceding Val-1,294, which is consistent with the hypothesis that a trypsin-like protease is responsible for ovochymase activation (1). Processing at this site would release a mature ovochymase protease with a calculated molecular mass of 25 kDa, which, considering that there is one potential N-glycosylation site within this domain (Fig. 1A), is comparable to the measured molecular mass of 30 kDa as determined by SDS/PAGE (1). A database search showed that the ovochymase protease domain had the highest amino acid identity to other serine proteases with similar substrate specificity (bulky hydrophobic or aromatic residues) such as chymotrypsin and elastase, both of which have 41% identity to ovochymase (Table 1). This similarity was reinforced by the presence of a common S1 substrate binding site among these three proteases, a Ser residue (Fig. 3, arrowhead). Interestingly, the ovochymase protease domain also showed a high level of identity (40%) to the protease domain of Drosophila nudel, a large multidomain protein found in the perivitelline space of Drosophila eggs, which is involved in an extracellular protease cascade that generates a signal to set up dorsoventral polarity in the embryo (18). This high degree of similarity existed in spite of the fact that the substrate specificity of nudel (Arg/Lys-X) differs from that of ovochymase (Phe specific). The other known Drosophila perivitelline-space serine proteases, snake, easter, and gastrulation defective (19), all of which act downstream of nudel (18), showed lower degrees of similarity to ovochymase (Table 1).
Table 1.
Serine protease | Amino acid identity, %
|
||
---|---|---|---|
Ovochymase | Ovotryptase1 | Ovotryptase2 | |
Ovochymase (Xenopus) | — | 32 | 39 |
Ovotryptase1 (Xenopus) | 32 | — | 36 |
Ovotryptase2 (Xenopus) | 39 | 36 | — |
Oviductin (Xenopus) | 34 | 47 | 38 |
Trypsin (Xenopus) | 35 | 35 | 44 |
Chymotrypsin b (bovine) | 41 | 37 | 39 |
Elastase 2a (human) | 41 | 36 | 40 |
Nudel (Drosophila) | 40 | 36 | 37 |
Snake (Drosophila) | 28 | 31 | 30 |
Easter (Drosophila) | 37 | 31 | 36 |
Gastrulation defective (Drosophila) | 27 | 24 | 23 |
A blast analysis of the remaining cDNA sequence revealed two additional serine protease domains N-terminal to the ovochymase protease domain (Fig. 1 A and B). The protease domain alignment (Fig. 3) indicated that these two proteases should be functional, because the His, Asp, and Ser of the serine protease catalytic triad were present, along with the conserved N-terminal hydrophobic amino acids and the Asp immediately preceding the active-site Ser necessary for proper folding of the catalytic site (20). The S1 substrate binding residue of Asp (Fig. 3, arrowhead) indicated a substrate specificity similar to trypsin, cleaving after basic amino acids. These characteristics led us to term these proteases ovotryptase1 and ovotryptase2, the order determined by their placement in the putative polyprotein. Both ovotryptase protease domains were preceded by Arg residues, indicating that the proteases would be activated by trypsin-like proteases. Results of database searches (Table 1) revealed that ovotryptase1 had the highest amino acid identity to Xenopus oviductin (47% identity), an oviductal trypsin-like protease that acts on the egg-envelope glycoprotein gp43 (21), whereas ovotryptase2 was most similar to Xenopus trypsin (44% identity). There did not seem to be any significant similarities between the ovotryptase domains and the ovochymase domain that would suggest a recent common ancestor, and there were no outstanding similarities between either of the ovotryptase domains and any of the four Drosophila egg perivitelline space proteases.
CUB Domains.
The blast analysis of the ovochymase cDNA also revealed the presence of five CUB domains, which, along with the three protease domains, completed the domain structure of the translated protein (Fig. 1). Although the function of CUB domains is largely unknown, these domains are common to several types of extracellular proteases, such as the tolloid protein involved in dorsoventral-axis formation, bone morphogenetic protein (BMP), and the complement subcomponents Clr and Cls (22). An alignment of the polyprotein CUB domains with those from various other proteins is shown in Fig. 4. The most characteristic features are the conservation of the four Cys residues that form two disulfide bonds, and various hydrophobic and aromatic amino acids that participate in forming the antiparallel β-barrel topography of the molecule (22).
The Proteases as Proteins.
A Western blot probed for ovochymase protein (Fig. 5A) showed the expected band at 30 kDa in samples of concentrated egg exudate or purified mature ovochymase protease, which represents the protease domain alone (3). In lysates of whole unactivated eggs, the antibodies recognized a band at ≈50 kDa, most likely representing the ovochymase proenzyme as the protease domain with the fifth CUB domain attached (calculated total molecular mass without glycosylation = 46 kDa; see Fig. 1B). An ovary lysate containing early-stage oocytes also showed only a 50-kDa ovochymase protein, suggesting that the polyprotein is processed shortly after translation; no immunoreactive band at a higher molecular mass, which would represent the intact polyprotein, was observed, even after long exposure times. Identical results were observed under both reducing and nonreducing electrophoretic conditions (not shown). Western blots of activated dejellied egg lysates showed results that were identical to those of the whole unactivated egg lysates, indicating that only a small fraction of ovochymase was released on egg activation (data not shown). Calculations based on the intensity of the bands on the Western blots for concentrated egg exudate (representing exudate from 10,000 eggs in 5 ml) versus whole-egg lysates (4 eggs per ml) indicated that only about 0.01% of the ovochymase proenzyme present in an egg was activated and released as the mature form when dejellied eggs were activated. Egg lysates obtained at time points up to 30 hr after fertilization showed a constant level of the 50-kDa ovochymase protein and no 30-kDa protein.
Similar results were found by using antibodies toward the ovotryptase proteases (Fig. 5 B and C). In unactivated eggs, a single 50-kDa protein was detected for ovotryptase1, which may correspond to the protease domain with the first CUB domain attached (calculated total molecular mass without glycosylation = 44 kDa). A single 65-kDa protein was detected for ovotryptase2, which may represent the protease domain with either the second and third or the third and fourth CUB domains attached (calculated total molecular masses without glycosylation = 59 kDa and 57 kDa, respectively). These protein bands were also present on Western blots of ovary lysates and persisted throughout the 30-hr postfertilization period (data not shown). No high molecular-mass bands were observed that would represent the intact polyprotein. Neither of the ovotryptase proteins were detected in activated egg exudate, indicating that these proteases were not released from dejellied eggs (data not shown). Therefore, it is unlikely that the trypsin-like protease purified from activated egg exudate is one of the ovotryptase proteases.
Immunolocalization of Proteases.
The anti-protease antibodies were used to immunolocalize the three proteases by confocal microscopy by using live dejellied eggs to detect surface proteins or by using eggs fixed in methanol to examine binding to internal egg proteins. Fig. 6 A, C, and E shows that in live unactivated eggs, antibodies to all three proteases labeled the egg surfaces; a high magnification view of ovochymase labeling showed a wide area of labeling between the plasma membrane and egg envelope (Fig. 6 G and H). Methanol-fixed eggs had the same labeling patterns as live eggs (not shown). Activated dejellied eggs (Fig. 6 B, D, and F) showed reduced levels of labeling at the egg surface for ovochymase and ovotryptase1. This result is consistent for ovochymase in that some ovochymase protease activity is released at egg activation but inconsistent with the Western blot data that showed that the vast majority of the protein remained associated with the egg. Perhaps, with live eggs, the antibody bound to a subpopulation of the ovochymase proteins, whereas the remaining proteins were inaccessible. It follows that for ovotryptase1, small amounts of protease may be released at egg activation but in amounts too small to be detected by Western blotting.
DISCUSSION
Polyprotein Structure.
Unexpectedly, the cDNA cloning results revealed that ovochymase was translated as part of a large polyprotein containing two additional serine protease domains, as well as several CUB domains. The additional protease domains, designated ovotryptase1 and ovotryptase2, were predicted to be functional, with substrate specificities similar to trypsin, and apparently activated by a trypsin-like protease or proteases. The deduced amino acid sequence for ovochymase confirmed experimental evidence (1) that it is a secreted serine protease with specificity for amino acids with bulky hydrophobic/aromatic side chains, and it is activated by a trypsin-like protease. The ovotryptase domains did not have a significant level of similarity to each other or ovochymase, ruling out gene duplication as the mechanism of polyprotein formation. More likely, the polyprotein was formed through gene splicing.
Western blot analysis supported the conclusions that the cDNA sequence found for ovochymase does indeed represent a translated polyprotein and that this original protein is processed soon after translation. Antibodies generated toward peptides based on the deduced amino acid sequences of the three protease domains each recognized a single protein in egg lysates, each one smaller than that expected for the intact polyprotein. The molecular masses of these three proteins fit a logical model of polyprotein processing in which hydrolysis would occur at linkage points between protein domains, leaving each protease domain with at least one CUB domain attached.
CUB domains seem to be a common feature of Xenopus extracellular proteases involved in developmental processes, as well as proteases in other organisms (22). Xenopus oviductin, a secreted oviductal serine protease that cleaves egg-envelope gp43 (ZPC) to gp41 during passage through the par recta oviduct to render the envelope penetrable to sperm (21), possesses two CUB domains C-terminal to the protease domain (10). Xenopus hatching enzyme, a secreted metalloprotease of the astacin family, which preferentially hydrolyzes egg-envelope gp120 to allow for embryo escape (23), also possesses two CUB domains C-terminal to the protease domain (24). We hypothesize that the CUB domains of these proteases function in extracellular-matrix binding. This hypothesis is supported by the fact that the mammalian spermadhesins, which are essentially one CUB domain, are secreted by the male reproductive tract to bind to the sperm membrane and have been shown to have egg-envelope binding activity (25). For mature Xenopus oviductin and the hatching enzyme, the CUB domains may bind to the envelope to concentrate the proteases in the region of their substrates. The CUB domains attached to ovochymase and the ovotryptases may serve to anchor the proenzymes to the egg surface. The hypothesis that CUB domains function in binding to the egg is testable, e.g., by using expressed CUB domains in egg-binding studies.
This example of a polyprotein containing multiple proteases is, to the extent of our knowledge, one of the first reported for a eukaryotic system. Viral DNA and RNA commonly code for polyproteins, and polyproteins have also been found representing prokaryotic proteins, plant proteins, fish antifreeze glycoproteins, and peptide hormones in a wide range of eukaryotic species. However, in higher animals, polyproteins represent relatively short polypeptides, not proteins, and in no reported case have the polyproteins contained protease domains. The only known exception is the Xenopus oviductal secreted protease oviductin, mentioned above, which was recently cloned by our laboratory (10). Oviductin is translated as the N-terminal portion of a protein containing another complete, albeit apparently inactive, serine protease domain; the two protease domains are cleaved apart before or shortly after secretion. Interestingly, ovotryptase1 had a very high amino acid identity (47%) to the oviductin protease domain, suggesting that these proteases may be evolutionarily related.
Why are ovochymase and the ovotryptases translated as part of a polyprotein? Cotranslation could be important in several ways, e.g., to ensure that the proteases are secreted together for proper localization on the egg surface/extracellular matrix or as a mechanism to produce the proper stoichiometry required for assembly of a multiprotease complex.
Protease Function.
Previous studies with protease inhibitors suggested a role for ovochymase in the hydrolysis of egg-envelope component gp69/64 as part of the block to polyspermy (1). However, recent studies with purified ovochymase have indicated that it is not involved in the reaction (L.L.L. and J.L.H., unpublished observations). The results presented here, showing that ovochymase and the ovotryptases are present primarily in the proenzyme forms throughout fertilization and development, suggest that the functions involve limited activation of the proteases. This scenario is reminiscent of the blood-clotting proteases as well as the extracellular proteases involved in development, such as the Drosophila perivitelline space proteases involved in embryonic axis formation mentioned above (18). In general, these proteases are uniformly present as proenzymes, and the activating signals are localized and brief, i.e., the proteases are deactivated by inhibitors or through the formation of complexes with other proteins or are immediately degraded (26). As for the timing of ovochymase/ovotryptase function, we know that, for at least ovochymase, a small fraction of active protease is released by dejellied eggs on activation, which suggests a role for the protease shortly after fertilization. However, it is also possible that this observed release is an artifact of the chemical dejellying process, rendering a portion of the protease population susceptible to cleavage once the dejellied egg is activated. However, the fact that ovochymase and the ovotryptases are secreted to the egg surface during oogenesis argues for a role early in the developmental process (e.g., before fertilization, during the fertilization process, or soon thereafter), because extracellular proteases involved later in development tend to be expressed and secreted by the embryo after fertilization.
Acknowledgments
This work was supported in part by U.S. Public Health Service Grant HD-04906, National Science Foundation Grants MCB-95-07087 and IBN 9723667, and a University of California, Davis, Bridge Program grant to L.L.L.
ABBREVIATION
- RACE
rapid amplification of cDNA ends
Footnotes
Data deposition: The sequence reported in this paper has been deposited in the GenBank database (accession no. U81290).
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