Table 3.
Publicly available pig genomics and proteomics internet resources
| Resource type | Description | Resource name | URL |
|---|---|---|---|
| Genome | Pig genome sequencing by SGSC | Pig tales | http://www.piggenome.org |
| Genome | Pig PreEnsembl at Sanger | Pig PreEnsembl | http://pre.ensembl.org/Sus_scrofa |
| Genome | Pig genomics at UIUC | Swine genomics | http://www.swinegenomics.com |
| Genome | NAGRP pig genome program | U.S. pig genome mapping | http://www.animalgenome.org/pigs |
| Genome | Pig genome project at Japan | Animal genome program | http://animal.dna.affrc.go.jp |
| Genome | NCBI pig genome resources | Pig genome resources | http://www.ncbi.nlm.nih.gov/projects/genome/guide/pig |
| Genome | Pig genomic information system | PigGIS | http://www.piggis.org |
| Genome | 0.66X genome sequencing | Sino-Danish pig genome | http://piggenome.dk |
| Genome | 100 Mb genome sequencing | Korean pig genome project | http://www.nlri.go.kr |
| Genome | SSC7 and 14 genome sequencing | EU SABRE project | http://www.sabre-eu.eu |
| QTLs | Pig QTL database | Animal QTLdb | http://www.animalgenome.org/QTLdb/pig |
| Genes/markers | TIGR pig gene index | SsGI | http://www.tigr.org |
| Genes/markers | NCBI SNP database | Pig SNP database | http://www.ncbi.nlm.nih.gov/SNP |
| Linkage map | USDA MARC map | US MARC linkage map | http://www.marc.usda.gov/genome/swine |
| Linkage map | Pig genome map viewer | NCBI map viewer | http://web.ncbi.nlm.nih.gov/mapview |
| Linkage map | PIGMAP viewer at Roslin | ARKdb web | http://www.thearkdb.org |
| Physical map | Sanger porcine physical map | Sanger WebChrom | http://www.sanger.ac.uk/Projects/S_scrofa |
| Physical map | Pig FPC clones to linkage maps | BAC clone map | http://www.animalgenome.org/cgi-bin/QTLdb/SS |
| Physical map | Somatic cell hybrid panel | SCH map | http://www.toulouse.inra.fr/lgc/pig/hybrid.htm |
| Physical map | IMpRH maps | RH map | http://www.toulouse.inra.fr/lgc/pig/cyto/cyto |
| Physical map | UNR-1/UNR-2 | RH map | http://www.cabnr.unr.edu/beattie |
| Comparative map | Multispecies comparisons | Evolution highway | http://evolutionhighway.ncsa.uiuc.edu |
| Comparative map | Pig-human comparative map | Comparative map | http://www.toulouse.inra.fr/lgc/pig/compare/compare |
| Comparative map | Jackson labs | Mammalian maps | http://www.informatics.jax.org |
| Comparative map | Japan pig-mouse map | Pig mouse map | http://ws4.niai.affrc.go.jp/dbsearch2/java/mhomo/pig |
| Expression | Pig array from US pig genome project | Pig microarray | http://www.pigoligoarray.org |
| Expression | 98,988 pig ESTs database at Iowa | Pig EST database | http://pigest.genome.iastate.edu |
| Expression | Pig EST sequences at Denmark | Pig EST | http://pigest.kvl.dk |
| Expression | Full-length cDNA libraries and ESTs | PEDE at Japan | http://pede.dna.affrc.go.jp |