Table 4.
Current chromosomal progress of the pig genome sequencing project (Nov 2006)
| Chr | Estimated length (bp) | No. of contigs | NoCs selected | NoCs sent | NoCs accessioned | NoCs finished | Total NoCs | Coverage (%) |
|---|---|---|---|---|---|---|---|---|
| SSC1 | 303,136,142 | 3 | 59 | 518 | 329 | 1 | 907 | 56.89 |
| SSC2 | 155,149,711 | 7 | 0 | 377 | 0 | 0 | 377 | 45.87 |
| SSC3 | 151,274,484 | 9 | 0 | 354 | 0 | 0 | 354 | 45.73 |
| SSC4 | 149,877,177 | 8 | 2 | 319 | 82 | 2 | 405 | 52.49 |
| SSC5 | 105,163,859 | 4 | 0 | 273 | 4 | 2 | 279 | 50.07 |
| SSC6 | 173,044,584 | 11 | 0 | 433 | 6 | 19 | 458 | 48.60 |
| SSC7 | 138,247,446 | 5 | 118 | 46 | 321 | 47 | 532 | 67.01 |
| SSC8 | 152,094,626 | 4 | 0 | 419 | 2 | 0 | 421 | 53.92 |
| SSC9 | 157,355,516 | 4 | 1 | 448 | 0 | 0 | 449 | 55.18 |
| SSC10 | 81,315,841 | 7 | 0 | 196 | 0 | 0 | 196 | 46.19 |
| SSC11 | 89,955,204 | 3 | 32 | 72 | 160 | 2 | 266 | 59.36 |
| SSC12 | 70,201,005 | 6 | 0 | 151 | 0 | 0 | 151 | 42.16 |
| SSC13 | 221,109,244 | 1 | 2 | 635 | 1 | 0 | 638 | 54.65 |
| SSC14 | 142,311,687 | 3 | 160 | 12 | 365 | 6 | 543 | 67.50 |
| SSC15 | 173,169,528 | 3 | 1 | 456 | 0 | 0 | 457 | 51.01 |
| SSC16 | 89,254,859 | 2 | 0 | 239 | 1 | 0 | 240 | 51.99 |
| SSC17 | 70,843,094 | 5 | 2 | 82 | 58 | 69 | 211 | 51.41 |
| SSC18 | 63,240,215 | 1 | 0 | 162 | 0 | 0 | 162 | 50.42 |
| SSCX | 135,575,825 | 21 | 0 | 275 | 0 | 0 | 275 | 39.29 |
| Total | 2,622,320,047 | 107 | 377 | 5,467 | 1,329 | 148 | 7,321 | |
| Average | 138,016,845 | 52.09 |
NoCs selected: number of clones selected for sequencing; NoCs sent: number of clones sent for sequencing; NoCs accessioned: number of accessioned sequence clones; NoCs finished: number of finished sequence clones; Total NoCs: total number of sequencing clones; Coverage (%): percentage of map covered by sequence clones. Source: Pig Pre-Ensembl: http://pre.ensembl.org/Sus_scrofa/