Table 1.
Miscoding lesions originally derived from A and T nucleotides | Miscoding lesions originally derived from C and G nucleotides | |||||||
---|---|---|---|---|---|---|---|---|
A→G T→C | A→C T→G | A→T T→A | Total A+Ta | C→A G→T | C→G G→C | C→T G→A | Total C+Gb | |
Chloroplast | 78 | 24 | 89 | 244 230 | 33 | 9 | 52 | 146 735 |
Mammoth | 39 | 7 | 9 | 81 790 | 16 | 8 | 597 | 49 684 |
Corrected Mammothc | 116 | 21 | 27 | 47 | 24 | 1763 | ||
Nucleotide ratio | 2.99 | 2.95 |
aTotal number of adenine and thymine nucleotides in dataset.
bTotal number of cytosine and guanine nucleotides in dataset.
cCorrected Mammoth: the number of observed lesions among the mammoth sequence data, scaled to match the total chloroplast nucleotides sequenced. For example, corrected mammoth count for A→G/T→C pair was calculated as (Observed Mammoth A→G/T→C)*(Total Chloroplast A+T)/(Total Mammoth A+T) = 39*244 320/81 790 = 116.