Table 2.
A→G T→C | A→C T→G | A→T T→A | C→A G→T | C→G G→C | C→T G→A | |
---|---|---|---|---|---|---|
Observeda | 39 | 7 | 9 | 16 | 8 | 597 |
Expectedb | 26.12 | 8.04 | 29.81 | 11.17 | 3.05 | 17.61 |
P-valuec | 0.011 | 0.86 | 8 × 10−4 | 0.17 | 0.013 | <1 × 10−5 |
Occurrence per bp sequenced | 1.5 × 10−4 | 0 | 0 | 9.7 × 10−5 | 9.9 × 10−5 | 0.01 |
aAbsolute number of miscoding lesions observed.
bExpected number of miscoding lesions, modelled using the Poisson distribution with rates derived from the chloroplast data.
cWhen using a 5% Bonferroni corrected significance level P-values below 5%/6=0.0084 are significant, leaving only (A→T/T→A) and (C→T/G→A) significant.