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. 2006 Dec 19;35(2):678–686. doi: 10.1093/nar/gkl1063

Figure 1.

Figure 1

An initial part of a global alignment from GAP4 on two protein sequences (SwissProt accession nos Q9NTI2 and Q9Y2G3). A difference block is indicated by the plus sign +. Each column of the alignment is marked with one of the three letters: l, m and h, which indicates one of the three parameter sets used to score the column.