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. 2006 Dec 14;35(2):441–454. doi: 10.1093/nar/gkl1066

Figure 4.

Figure 4

(A) Overlay of different X-ray and cryo-EM structures of the L11 protein. Cα traces have been extracted from the PDB files: 1MMS, 487D, 1JQT, 1JQS, 1JQM, 1R2W, 1R2X, 2B9P, 2B66, 2B9N, 1NKW, 1PNU, 1SM1, 1VOR, 2AW4, 2AWB, 1P85 and 1P86. The structures are aligned on the stable secondary structure elements of either the N-terminal domain (L11ntd in blue; residues 9–14, 26–29, 35–45, 53–59 and 67–69) or the C-terminal domain (L11ctd in dark blue; residues 76–83, 98–100, 102–112, 121–132 and 137–139). (B) Overlay of different X-ray and cryo-EM structures containing the L11 protein and its cognate RNA. Cα traces of L11 (blue) and P traces of the RNA (red) have been extracted from the PDB files: 1MMS, 1R2W, 1R2X, 2B9P, 2B66, 2B9N, 1NKW, 1NWX, 1NWY, 1PNU, 1PNY, 1LNR, 1SM1, 1VOR, 2AW4, 2AWB, 1P85 and 1P86. The structures are aligned on the RNA (1052–1108 nt).