Table 3. Most common interactions for EST data.
Left partner | Right partner | Counts | |||||
HUGO gene symbol | Locus | HUGO gene symbol | Locus | Observations | Libids | Labs | Tissuetypes |
SAPS2 | 22q13.33 | INTS3 | 1q21.3 | 11 | 2 | 1 | 1 |
RPGF2_HUMAN | 4q32.1 | IG | 7 | 11 | 2 | 1 | 2 |
COL6A1 | 21q22.3 | DOT1L | 19p13.3 | 11 | 1 | 1 | 1 |
FAF1 | 1p33 | DSCR1L1 | 6p12.3 | 7 | 1 | 1 | 1 |
Q96NA9_HUMAN | 14q32.2 | OGFOD1 | 16q12.2 | 6 | 3 | 1 | 2 |
DDX42 | 17q23.3 | ANKRD44 | 2q33.1 | 6 | 1 | 1 | 1 |
CD40 | 20q13.12 | SEZ6L | 22q12.1 | 5 | 1 | 1 | 1 |
ATF6 | 1q23.3 | IGF2 | 11p15.5 | 5 | 1 | 1 | 1 |
EIF4G1 | 3q27.1 | RABEP1 | 17p13.2 | 5 | 1 | 1 | 1 |
IG | 22 | KIAA1279 | 10q22.1 | 5 | 1 | 1 | 1 |
PSMD6 | 3p14.1 | ZNF646 | 16p11.2 | 5 | 1 | 1 | 1 |
SLC5A10 | 17p11.2 | FGG | 4q31.3 | 5 | 1 | 1 | 1 |
The symbol IG indicates that a partner has aligned to a specific intergenic region which is the same for all observations for a given interaction. Observations indicates how many times a given interaction has been observed, Libids how many different dbEST library ids these observations represent, and similarly for Labs and Tissuetypes.