Table 4. Most common interactions for mRNA data.
| Left partner | Right partner | Counts | |||
| HUGO gene symbol | Locus | HUGO gene symbol | Locus | Observations | Labs |
| IG | 19 | GRM7 | 3p26.1 | 4 | 2 |
| IG | 22 | CDH13 | 16q23.3 | 3 | 2 |
| IG | 10 | NP_057109.2 | 16p12.2 | 2 | 1 |
| Q96PV3_HUMAN | 5q33.3 | CK016_HUMAN | 11p15.4 | 2 | 2 |
| KCNJ13 | 2q37.1 | Q96DH5_HUMAN | 19p13.3 | 2 | 1 |
| IG | 12 | NIPBL | 5p13.2 | 2 | 1 |
| TMEFF1 | 9q31.1 | PRKDC | 8q11.21 | 2 | 1 |
| SLIT3 | 5q34 | MAGED2 | Xp11.21 | 2 | 2 |
| *MLL | 11q23.3 | AFF1 | 4q21.3 | 2 | 2 |
| APP | 21q21.3 | RAB11FIP1 | 8p12 | 2 | 1 |
| HKR2_HUMAN | 19q13.43 | KIAA1244 | 6q23.3 | 2 | 1 |
| *IG | 12 | LMBRD1 | 6q13 | 2 | 1 |
| *MLL | 11q23.3 | Q6AI58_HUMAN | 4p12 | 2 | 1 |
| *CREB3L2 | 7q33 | FUS | 16p11.2 | 2 | 1 |
| FOXK2 | 17q25.3 | RAB22A | 20q13.32 | 2 | 1 |
| C16orf33 | 16p13.3 | HNRPU | 1q44 | 2 | 1 |
The symbol IG indicates that a partner has aligned to a specific intergenic region which is the same for all observations for a given interaction.
*
Corresponds to known fusion events.