Table 4. Most common interactions for mRNA data.
Left partner | Right partner | Counts | |||
HUGO gene symbol | Locus | HUGO gene symbol | Locus | Observations | Labs |
IG | 19 | GRM7 | 3p26.1 | 4 | 2 |
IG | 22 | CDH13 | 16q23.3 | 3 | 2 |
IG | 10 | NP_057109.2 | 16p12.2 | 2 | 1 |
Q96PV3_HUMAN | 5q33.3 | CK016_HUMAN | 11p15.4 | 2 | 2 |
KCNJ13 | 2q37.1 | Q96DH5_HUMAN | 19p13.3 | 2 | 1 |
IG | 12 | NIPBL | 5p13.2 | 2 | 1 |
TMEFF1 | 9q31.1 | PRKDC | 8q11.21 | 2 | 1 |
SLIT3 | 5q34 | MAGED2 | Xp11.21 | 2 | 2 |
*MLL | 11q23.3 | AFF1 | 4q21.3 | 2 | 2 |
APP | 21q21.3 | RAB11FIP1 | 8p12 | 2 | 1 |
HKR2_HUMAN | 19q13.43 | KIAA1244 | 6q23.3 | 2 | 1 |
*IG | 12 | LMBRD1 | 6q13 | 2 | 1 |
*MLL | 11q23.3 | Q6AI58_HUMAN | 4p12 | 2 | 1 |
*CREB3L2 | 7q33 | FUS | 16p11.2 | 2 | 1 |
FOXK2 | 17q25.3 | RAB22A | 20q13.32 | 2 | 1 |
C16orf33 | 16p13.3 | HNRPU | 1q44 | 2 | 1 |
The symbol IG indicates that a partner has aligned to a specific intergenic region which is the same for all observations for a given interaction.
Corresponds to known fusion events.