Table 2. Distribution of gene-chip predicted SFPs among polymorphic probesets.
| Datasets | Number of SFPs per probeset | ||||||||||
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | |
| CP&LG | |||||||||||
| (−)SFP-PS | 1255 | 439 | 213 | 132 | 106 | 69 | 64 | 51 | 53 | 36 | 17 |
| (+)SFP-PS | 720 | 218 | 103 | 50 | 45 | 33 | 25 | 21 | 19 | 18 | 17 |
| (total) | 1975 | 657 | 316 | 182 | 151 | 102 | 89 | 72 | 72 | 54 | 34 |
| CP&RT | |||||||||||
| (−)SFP-PS | 6994 | 3377 | 1774 | 1068 | 674 | 529 | 430 | 421 | 325 | 311 | 264 |
| (+)SFP-PS | 5252 | 1187 | 454 | 266 | 168 | 129 | 104 | 98 | 99 | 98 | 73 |
| (total) | 12246 | 4564 | 2228 | 1334 | 842 | 658 | 534 | 519 | 424 | 409 | 337 |
| LG&RT | |||||||||||
| (−)SFP-PS | 7182 | 3424 | 1864 | 1054 | 732 | 549 | 406 | 391 | 368 | 330 | 304 |
| (+)SFP-PS | 5809 | 1456 | 648 | 388 | 259 | 181 | 142 | 142 | 132 | 140 | 115 |
| (total) | 12991 | 4880 | 2512 | 1442 | 991 | 730 | 548 | 533 | 500 | 470 | 419 |
The probesets (PS) and SFPs data have been taken from estimated FDR (delta) of 11.9% (delta = 2) in CP&LG, 10% (delta = 2) in CP&RT and 10% (delta = 1.6) in LG&RT respectively. The sign (+/−) indicates direction of polymorphism as explained in Figure 3 legend. CP = Cypress, LG = LaGrue and RT = RT0034.