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. 2007 Mar 14;2(3):e294. doi: 10.1371/journal.pone.0000294

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Li et al.

This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.

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Analysis of non-coding intergenic TARs. (A) Scatterplot of GC2 versus GC3 in all gene models (n = 46,976), FL-cDNA-supported PASA gene models (n = 11,494), and intergenic TARs (n = 5256). The intergenic TARs were distal (>1Kb) to a gene model excluding those with a hit in the ProSite database. (B) Overlapping TARs with putative non-coding transcripts. A 5-Kb region represented by the high-resolution tiling array is shown. The interrogating probes are aligned to the chromosomal coordinates, with the fluorescence intensity value depicted as a vertical line. Gene models, no-exonic TARs and putative non-coding transcripts are depicted as horizontal arrows, which point to the direction of transcription. A portion of the region containing four non-coding transcripts and a pair of TARs is enlarged and shown at the bottom. (C) Predicted secondary structure of the TAR Chr10fwd_10524178. The sequence corresponding to the putative nc-RNA ts_342 is highlighted.