Table 5.
.D and JH segment usage in IgM and IgG from young and aged humans
| No. of sequences (%) | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| D segment | IgM naive | IgM memory | IgG | ||||||
| New namea | Old name | Young | Aged | Young | Aged | Young | Aged | Total | Control (%) |
| 1–1 | n.a. | 0 (0·0) | 0 (0·0) | 1 (1·7) | 0 (0·0) | 0 (0·0) | 1 (1·3) | 2 (0·6) | 0·6 |
| 2–2 | DLR4 | 3 (8·1) | 0 (0·0) | 0 (0·0) | 0 (0·0) | 4 (4·7) | 1 (1·3) | 8 (2·4) | 3·7 |
| 3–3 | DXP4 | 2 (5·4) | 2 (7·1) | 0 (0·0) | 0 (0·0) | 3 (3·5) | 3 (3·8) | 10 (3·1) | 4·8 |
| 4–4 | DA4 | 0 (0·0) | 0 (0·0) | 0 (0·0) | 0 (0·0) | 0 (0·0) | 1 (1·3) | 1 (0·3) | 0·3 |
| 5–5 | DK4 | 0 (0·0) | 0 (0·0) | 1 (1·7) | 1 (2·6) | 1 (1·2) | 0 (0·0) | 3 (0·9) | 1·2 |
| 6–6 | DN4 | 0 (0·0) | 0 (0·0) | 0 (0·0) | 1 (2·6) | 1 (1·2) | 1 (1·3) | 3 (0·9) | 1·3 |
| 1–7 | DM1 | 0 (0·0) | 0 (0·0) | 0 (0·0) | 0 (0·0) | 0 (0·0) | 0 (0·0) | 0 (0·0) | 0·5 |
| 2–8 | DLR1 | 0 (0·0) | 0 (0·0) | 0 (0·0) | 1 (2·6) | 0 (0·0) | 2 (2·6) | 3 (0·9) | 0·8 |
| 3–9 | DXP1 | 1 (2·7) | 1 (3·6) | 0 (0·0) | 1 (2·6) | 0 (0·0) | 2 (2·6) | 5 (1·5) | 2·1 |
| 3–10 | DXP′1 | 6 (16·2) | 4 (14·3) | 3 (5·1) | 2 (5·1) | 12 (14·0) | 6 (7·7) | 33 (10·1) | 8·1 |
| 4–11 | DA1 | 0 (0·0) | 0 (0·0) | 0 (0·0) | 0 (0·0) | 0 (0·0) | 0 (0·0) | 0 (0·0) | 0·3 |
| 5–12 | DK1 | 3 (8·1)c | 1 (3·6) | 0 (0·0) | 0 (0·0) | 2 (2·3) | 2 (2·6) | 8 (2·4) | 1·6 |
| 6–13 | DN1 | 2 (5·4)c | 1 (3·6) | 1 (1·7) | 1 (2·6) | 1 (1·2) | 3 (3·8) | 9 (2·8) | 3·5 |
| 1–14 | DM2 | 0 (0·0) | 0 (0·0) | 0 (0·0) | 0 (0·0) | 0 (0·0) | 0 (0·0) | 0 (0·0) | 0·0 |
| 2–15 | DLR2 | 4 (10·8) | 2 (7·1) | 1 (1·7) | 4 (10·3) | 4 (4·7) | 2 (2·6) | 17 (5·2) | 2·4 |
| 3–16 | n.a. | 1 (2·7) | 0 (0·0) | 2 (3·4)c | 1 (2·6) | 3 (3·5) | 3 (3·8) | 10 (3·1) | 1·0 |
| 4–17 | n.a. | 0 (0·0) | 1 (3·6) | 3 (5·1) | 0 (0·0) | 2 (2·3) | 0 (0·0) | 6 (1·8) | 2·4 |
| 5–18 | n.a. | 0 (0·0) | 0 (0·0) | 0 (0·0) | 0 (0·0) | 0 (0·0) | 0 (0·0) | 0 (0·0) | 1·2 |
| 6–19 | n.a. | 0 (0·0) | 3 (10·7) | 5 (8·5) | 4 (10·3) | 1 (1·2) | 6 (7·7) | 19 (5·8) | 4·7 |
| 1–20 | n.a. | 0 (0·0) | 0 (0·0) | 0 (0·0) | 0 (0·0) | 0 (0·0) | 0 (0·0) | 0 (0·0) | 0·7 |
| 2–21 | DLR3 | 0 (0·0) | 0 (0·0) | 1 (1·7) | 0 (0·0) | 1 (1·2) | 2 (2·6) | 4 (1·2) | 1·2 |
| 3–22 | D21/9 | 4 (10·8) | 1 (3·6) | 6 (10·2) | 3 (7·7) | 4 (4·7) | 2 (2·6) | 20 (6·1) | 3·8 |
| 4–23 | n.a. | 1 (2·7) | 0 (0·0) | 0 (0·0) | 0 (0·0) | 6 (7·0) | 6 (7·7) | 13 (4·0) | 1·1 |
| 5–24 | n.a. | 1 (2·7) | 1 (3·6) | 1 (1·7) | 0 (0·0) | 1 (1·2) | 0 (0·0) | 4 (1·2) | 0·8 |
| 6–25 | n.a. | 0 (0·0) | 0 (0·0) | 0 (0·0) | 0 (0·0) | 0 (0·0) | 0 (0·0) | 0 (0·0) | 0·0 |
| 1–26 | n.a. | 0 (0·0) | 0 (0·0) | 6 (10·2)c | 2 (5·1) | 4 (4·7) | 2 (2·6) | 14 (4·3) | 1·7 |
| 7–27 | DHQ52 | 0 (0·0) | 0 (0·0) | 1 (1·7) | 0 (0·0) | 0 (0·0) | 0 (0·0) | 1 (0·3) | 0·9 |
| Not detectedb | 10 (27·0) | 11 (39·3) | 28 (47·5) | 18 (46·2) | 36 (41·9) | 33 (42·3) | 136 (41·6) | 49.5 | |
| Total | 37 (100·0) | 28 (100·0) | 59 (100·0) | 39 (100·0) | 86 (100·0) | 78 (100·0) | 327 (100·0) | 100.0 | |
| JH segment | |||||||||
| JH 1 | 0 (0·0) | 1 (3·6) | 0 (0·0) | 0 (0·0) | 2 (2·5) | 0 (0·0) | 3 (1·0) | 1·0 | |
| JH 2 | 2 (5·4) | 2 (7·1) | 0 (0·0) | 0 (0·0) | 2 (2·5) | 1 (1·3) | 7 (2·2) | 0·0 | |
| JH 3 | 5 (13·5) | 7 (25·0) | 10 (17·2) | 4 (10·5) | 11 (13·9) | 8 (10·7) | 45 (14·3) | 9·1 | |
| JH 4 | 15 (40·5) | 13 (46·4) | 35 (60·3) | 22 (57·9) | 42 (53·2) | 38 (50·7) | 165 (52·4) | 52·5 | |
| JH 5 | 5 (13·5) | 0 (0·0) | 3 (5·2) | 8 (21·1) | 9 (11·4) | 17 (22·7) | 42 (13·3) | 15·2 | |
| JH 6 | 10 (27·0) | 5 (17·9) | 10 (17·2) | 4 (10·5) | 13 (16·5) | 11 (14·7) | 53 (16·8) | 22·2 | |
| Total | 37 (100·0) | 28 (100·0) | 58 (100·0) | 38 (100·0) | 79 (100·0) | 75 (100·0) | 315 (100·0) | 100·0e | |
Names of the 27 human functional D segments are as in Corbett et al. [14]. The 27 D segments are aligned on the basis of their relative positions in the D locus. 1–1 is the most VH locus-proximal and 7–27 the most JH locus-proximal.
Not detected indicates sequences in which no D segment was able to be assigned in this study.
These data include sequences in which D–D fusion was detected. D–D fusion was treated as two identified D segments.
These data were cited from rearranged heavy chain sequence analysis reported by Corbett et al. [14].
These data were cited from healthy adult peripheral B cell analysis reported by Yamada et al. [18]. n.a.: Not available.