Table 1.
Target | Type1,2 | Code3 | Tm4 | Length | Sequence | Exon no. | Product size |
---|---|---|---|---|---|---|---|
IFN-γ | St. for | IFN-g1 | 57·7 | 29 | ATGAAATATACAAGTTATATCTTGGCTTT | 1 | 494 |
St. rev | IFN-g2 | 69·6 | 26 | GATGCTCTTCGACCTCGAAACAGCAT | 4 | 494 | |
For | F327 | 59·4 | 23 | CTGACTAATTATTCGGTAACTGACTTG | 3/4 | 107 | |
Rev* | R433 | 60·4 | 19 | GCGACAGTTCAGCCATCAC | 4 | 107 | |
Probe | P383 | 65·2 | 24 | TCCAACGCAAAGCAATACATGAAC | 4 | ||
IL-4 | St. for | IL-4/1 | 63·6 | 21 | ATGGGTCTCACCTCCCAACTG | 1 | 614 |
St. rev | IL-4/2 | 56·7 | 20 | TCAGCTCGAACACTTTGAATAT | 4 | 614 | |
For | F166 | 60·0 | 20 | ATCTTTGCTGCCTCCAAGAA | 2/3 | 102 | |
Rev | R267 | 60·3 | 19 | GCAGCGAGTGTCCTTCTCA | 3 | 102 | |
Probe | P216 | 70·0 | 20 | TGCGACTGTGCTCCGGCAGT | 3 | ||
TGF-β | St. for | ex6F | 65·8 | 20 | GGCTGGAAGTGGATCCACGA | 6 | 243 |
St. rev | ex7R | 68·0 | 21 | GCAGGAGCGCACGATCATGTT | 7 | 243 | |
For | F949 | 60·7 | 20 | GGCTACCATGCCAACTTCTG | 6 | 100 | |
Rev | R1048 | 60·3 | 20 | CCGGGTTATGCTGGTTGTAC | 7 | 100 | |
Probe | P987 | 68·8 | 21 | CATTTGGAGCCTGGACACGCA | 6 | ||
IL-10 | St. for | F109 | 59·2 | 20 | CTGCCTAACATGCTTCGAGA | 1 | 494 |
St. rev | R602 | 59·5 | 20 | CCAGATCCGATTTTGGAGAC | 5 | 494 | |
For | F373 | 60·7 | 20 | CGCTGTCATCGATTTCTTCC | 3/4 | 88 | |
Rev | R460 | 59·6 | 23 | TGCCTTTCTCTTGGAGCTTATTA | 4/5 | 88 | |
Probe | P405 | 69·9 | 20 | GAGCAAGGCCGTGGAGCAGG | 4 | ||
β-actin | St. for | F745 | 58·1 | 19 | CCCTGGAGAAGAGCTACGA | 4 | 509 |
St. rev | R1253 | 58·2 | 20 | TAAAGCCATGCCAATCTCAT | 6 | 509 | |
For | F926 | 63·9 | 19 | TTGCCGACAGGATGCAGAA | 5 | 76 | |
Rev | R1001 | 62·3 | 23 | TCAGGAGGAGCAATGATCATTTGAT | 5/6 | 76 | |
Probe* | P954 | 72·7 | 20 | TGCCCTGGCACCCAGCACAA | 5 |
St., standard; For, forward; Rev, reverse.
A slight modification of the reference sequence is indicated by (*).
Code for primers designed for this study indicates nucleotide position from the start codon (atg).
Tm, primer melting temperature, calculated with Primer 3 software using default parameters. IFN: interferon; IL: interleukin; TGF: transforming growth factor.