TABLE 5.

Predicted intrinsic transcription terminators

Familya	Positionb	Sequencec	Tetraloopd	Locuse	Gene
1	39856	ATTTATTTGAATAAAAGGGTTGCTTCGGCAACCCTTTTTGCGTATTATAGC	UUCG	066	h
1	54582	AAATAATTAAAGAAAAGGGTTGCTTCGGCAGCCCTTTTCTCGTATTATAGC	UUCG	087	h
1	68356	TGGATATTAATCAGAAAGGTAGCTTCGGCTACCTTTTTTCGTTTTCAGAGC	UUCG	116	h
1	109856	AAATAACCAAAGAAAGGGGTTGCTTCGGCAGCCCTTTTTGCGTATTATAGC	UUCG	199	h
1	139742	AAAAATCGTAAATTTAGGGTTGCTTCGGCAGCCCTTTTTTCGTATTATAGC	UUCG	264	nadV
1	226081#	GAAACAGACAACAAAGGGGACTCTTCGGAGTCCCTTTTTGCGTTTATAGAC	UUCG	363	23
1	233033(−)	TTAACCAACTGTTAAAGGGTGACTTCGGTCGCCCTTTTTTCGTTTACGTCT	UUCG	373	h
2	9426	TTAAACACTGTTAAGAAAGCGCCTTCGGGCGCTTTTTTTGTTTTTGTCGGA	UUCG	012	nrdD
2	72687	TTTCAAAGAACAAGAATAGCGCCTTCGGGGCGCTCTTTATGAGGTAAACATG	UUCG	122	h
2	90272	TAACACAACGAACACAAAGCGCCTACGGGCGCTTTTTTTATGCAAGGAAGG	UACG	154	h
2	158804	CGAAACTCAATTAACAAAGCGCCTCCGGGCGCTTTTTTTGTTTAGAACTCC	UCCG	293	ch
3	21144	TATTCTTGAAGAAAAGGGTTGACTGCGGTCAGCCCTTTCGCGTATTATAGC	(UGCG)	037	h
3	59696	CGAATAATGAAAAAAGGGTTGACAGATGTCAGCCCTTTCGTGTATTCTACG	(AGAU)	097	h
3	97797	AAAAGTAATAAAAAAGGGTTGACAGATGTCAGCCCTTTCGCGTATTATACA	(AGAU)	169	h
3	100191	CGTAATTGAAGAAAAGGGTTGACGCTTGTCAGCCCTTTCTTGTATTATCTC	(GCUU)	174	h
3	121374	AAAACTTTTCGAAAAGGGTTGACTACGGTCAACCCTTTCTTGTATTATAGC	UACG	231	h
3	148817	TTTCAATAAAAATAAGGTTGACCATCTTGGTCAACCTCTTTTCTTGGGCGA		277	nrdA
3	150224	ATAATTAAAGAAAAGGGTTGAACAGATGTCAGCCCTTTTTTGTATGCTTCG	(AGAU)	279	nrdC
4	31635	GTTCAAGGGTTAATAAAAGGGGCGAAAGCCCCTTTTTTCGTATAAATACTT	GAAA	057	30
4	48888	ACTGGTTTTAATGAATAAGGGGCATTCGCCCCTTTTATTTGAGGAATACAC	(AUUC)	080	regA
4	62011(−)#	CTACAGACCATAAAAAAAGGGGCGAATGCCCCTTTTTTTATTCTTTTTCGC	(GAAU)	103	h
4	154605	ATTTGGGGTAACGCGGTGGGCACGTAAGTGCCCTTTTATTCCCTTTGAAGT	GUAA	284	h
5	35862	CCTGTAATCTCTCATTTAGCCCCGAAAGGGGCTTTTTTAGGTTTGAGCCGG	GAAA	061	ch
5	184096(−)	GTTAGACACAAGCAATAAGCCCCTATCGGGGCTTTTTTTGTATCTGAATCT	(UAUC)	325	3
5	238328(−)	TACGCAATGCAATAAGAAAGCCCTTCGGGGCTTTTTTTATACGCGAAGCAA	UUCG	383	35
6	32575#	TCGATTGAATAAGAAAAGGGAGCAAATTGCTCCCTTTTTTGATCATGGTGT		058	h
6	76557#	AGTATAGTTACACAAAAGGGAGCTAATTGCTCCCTTTTTGCTATTCATCAT		130	h
6	87419#	ACGCAGAAAATAAAAAAGGGAGCATTCGCTCCCTTTTTGCTATTTGTTTTT	(AUUC)	149	h
6	143423#	AATGGTGAAATGAGAAAGGGAGCTTAGTGCTCCCTTTTTTATAACCAATAA		271	h
6	236858#	ATAATAGATACGAAAAAGGGAGCAATTTGCTCCCTTTTTTATTAGTCAGAA		378	uvsW
7	65690	ATCACAGACGCAATTTAAGCCGCATTTCGCGGCTTTTTGAGGTTCATATGA		111	h
7	229959#	AACGCCATAATAGAAAAGCCCGCATTTAGCGGGCTTTTTTGTGTCTACGAG		368	h
7	231296(−)	CCTGATTGATAATTAAAAAGCGCATTTTGCGCTTTTTTTGTATCTATTGGT		371	h
8	78629	GAAGATGAAAACAACAAAGCCCCTTAATTGGGGCTTTTTTATGGGTGAAAG		134	h
8	107118	ACTATTGACTTATCCAGAGCCCCTTAATTGGGGCTTTTTTAGGTCTGAAGA		194	h
8	126416	AGACTGGCGTTAATAAAAGCCCCTTAATTGGGGCTTTTTTAGGTTTGATGA		243	h
8	143013	GACTTGAATCACATAAAAGCCCCTTAATTGGGGCTTTTTTCGTTTTAGCGG		270	h
9	3179	CGATTAATGAATGGAAAGGGGCTTAACAGCCCCTTTGTTCTCTCTATAGGA	UAAC	005	32
9	46933	CTAGATTTTGTAAGTTACGGGGCGTAACAGCCCCTTTTTTTGAATATTTTA		077	45
10	5657	CTAATACCCACGAGACCCGTTGATTTGTCAGCGGGTCTTTTAGCCATTTGA	(UUUG)	008	uvsX
10	209948	TCAATGCTAATAAACGGGTGAGATTGATTTCTCACCCTTTTTTGTATGAGC		348	12
11	61307	AATAGTTGAATAAAAAGGGTTGCACTGTGCAGCCCTTTTCTATATCATGAG		101	h
11	128903	ATTAATTAAAGAAAAGTGGTTGCTCTATGCAGCCACTTTCTGTATTATAGC		249	h
Unrelated	13732	CTTCGACTAATTAAAATGCCTCGTTTTCGGGGCTTTTTTATGTTTATCGTA	UUUU	020	h
	85042(−)	GTCTTTCCAATGTAGAACCCGTCTTCTCGACGGGTTACCACATGAATCTCA		146	segD
	117954	CCATCGTATGTTTTTTAAGACGCTTCGGCGTCTTTTTTTCGGTTTGAAGAA	UUCG	221	h
	132112	TCCGATGCAGACAACGTCCGTGCCATGTGTATGGACGTTGTTCGTTTATTG		255	h
	138122	ACAGCTTAATTGAAATGTGCAGATTCGTCTGCACATTTTGTTTAATAACGA	UUCG	263	h
	160380#	ACGAATAAAGAAAAGGGAGAGTACAACTGTTACTCTCCCTTTTTTTGGTCA		296
	167720(−)	ATAAGGCAAATCGTAAAGGGCGCAAATAGCGCCCTTTTTTACGGCATAATA		299	ch
	168272(−)	TTTAAATAAGTGATAAGGGCGGCATTGTGCTGCCCTTTTTTGTACAGAGGT		300	ch
	171605#	TAAGCTATAAAAGAAAAGCCCCGTTTTTGGGGCTTTTTTGTTTAATGTGAG	UUUU	305	h
	179037(−)#	AAGAAAATCGCAGAAAGTTGAAGTTTTTTTCAATTTTCTGCGAAAATACCG	UUUU	316	h
	194945(−)	TTAAATAATCAAAACGGGGCGGCTATGTCGCCCCTTTGTTTCACACGAAAT		339	h
	196440	ATCGTCTTTAATGAACAGCCCGCCATTGTGCGGGCTTTTTTGTGCATTAAA		340	25
	203021	AAGTAAACAACTCATTAGGCGCGTGTTCGCGCCTTTCTTGGAGATTAAGAT	(UGUU)	343	8
	215638	ATGCTTATTTTAACGCTGTGTGCAGCTCGTACGCAGCGTTTGTCTATTTTA		353	h

^aTerminator family of related sequence (80% identity over 80% of the sequence).

^bGenome position of the first base of the hairpin. (−), present on the minus strand; #, likely to function on both strands, located between convergently transcribed genes.

^cUnderlined bases are predicted to be in the helix. G:U pairs are allowed.

^dTerminator-stabilizing tetraloop sequences, when present (those in parentheses are not commonly observed).

^eLocus refers to the preceding 5′ KVP40 CDS; name refers to the orthologous phage T4 gene aligning with the 5′ locus, except nadV. ch, conserved hypothetical; h, hypothetical.