TABLE 7.
KVP40 CDSs with homologs to T4 hypothetical, P1, and other phage CDSs
| Phagea | KVP40 CDS (aa)b | Homologous CDS (aa) | No. of residues/total (%)c
|
E value | |
|---|---|---|---|---|---|
| Identical | Similar | ||||
| T4 | 281 (334) | nrdC.10 (325) | 153/323 (47) | 212/323 (65) | 6e-56 |
| 153 (346) | nrdC.11 (336) | 102/346 (29) | 168/346 (48) | 3e-34 | |
| 262 (190) | 30.2 (278) | 54/152 (35) | 85/152 (55) | 4e-19 | |
| 055 (198) | 30.2 (278) | 52/151 (34) | 86/151 (56) | 3e-17 | |
| 092 (170) | tk.4 (155) | 70/166 (42) | 96/166 (57) | 4e-16 | |
| 070 (154) | 30.3 (152) | 58/149 (38) | 81/149 (53) | 9e-16 | |
| 322 (151) | 57B (152) | 56/143 (39) | 81/143 (56) | 9e-15 | |
| 336 (161) | 5.1 (164) | 53/164 (32) | 85/164 (51) | 9e-14 | |
| 069 (116) | α-gt.4 (105) | 30/91 (32) | 51/91 (55) | 8e-06 | |
| 379 (56) | uvsY.-2 (55) | 24/51 (47) | 35/51 (68) | 2e-05 | |
| 113 (94) | nrdA.1 (108) | 34/85 (40) | 50/85 (58) | 3e-05 | |
| 126 (91) | 31.1 (102) | 28/89 (31) | 41/89 (45) | 7e-04 | |
| 076 (88) | 45.2 (62) | 18/52 (34) | 34/52 (64) | 3e-03 | |
| 279-2 (208) | vs.1 (181) | 40/130 (30) | 62/130 (46) | 1e-02 | |
| 040 (235) | dda.2 (248) | 28/131 (21) | 63/131 (47) | 3e-02 | |
| 303 (120) | arn.3 (99) | 23/77 (29) | 40/77 (51) | 1e-01 | |
| P1 | 090 (305) T4 PseT | pap (168) | 44/150 (29) | 73/150 (48) | 1e-08 |
| 010 (427) T4 gp41 | ban (454) | 49/217 (22) | 92/217 (42) | 1e-03 | |
| 341 (646) T4 gp6 | bplA (477) | 50/227 (22) | 96/227 (42) | 6e-03 | |
| 357 (166) T4 gp19 | tubB (203) | 21/76 (27) | 35/76 (46) | 7e-03 | |
| 358 (515) T4 gp20 | proA (569) | 35/147 (23) | 58/147 (39) | 2e-02 | |
| 331 (151) T4 gp4 | pmgV (120) | 19/66 (28) | 34/66 (51) | 2e-02 | |
| 349 (559) T4 wac | 23 (568) | 39/162 (24) | 68/162 (41) | 3e-02 | |
| 344 (253) T4 gp9 | 5 (210) | 14/46 (30) | 23/46 (50) | 7e-01 | |
| 326 (646) | sit (1140) | 114/480 (23) | 193/480 (40) | 1e-04 | |
| 289 (90) | pmfB (140) | 19/73 (26) | 39/73 (53) | 2e-03 | |
| 183 (82) | tciB (54) | 9/42 (21) | 24/42 (57) | 3e-03 | |
| 169 (109) | upfC (94) | 11/36 (30) | 17/40 (42) | 5e-02 | |
| 061 (270) | udrA (203) | 19/66 (28) | 34/66 (51) | 4e-01 | |
| Others | 016 (174) | T5 orf4c (173) | 53/145 (36) | 74/145 (51) | 2e-16 |
| 061 (270) | TM4 80 (192) | 38/105 (36) | 58/105 (55) | 1e-12 | |
| 155 (131) | L5 61 (125) | 42/98 (42) | 55/98 (56) | 8e-11 | |
a
T4 CDSs are labeled with the GenBank AF158101 nomenclature (44). P1 nomenclature and CDS files were kindly provided by M. Lobocka and M. Yarmolinsky (personal communication).
b
CDS number and length of encoded protein in amino acids (aa).
c
BlastP statistics shown are presented as number of identities or similarities and the Expect value obtained with the BLOSUM45 matrix (T4) or WU BlastP 2.0 with BLOSUM62 (others).