Table 4.
Patterns for method 2, recognition of DNA regions stimulated by the type II IFN (IFNγ)
| Site 1 | Site 2 | W = F1/F2 (weight for the pattern) |
| strong STAT1 (-) from -350 to +350 |
STAT1 (-) from -350 to +350 |
20.00 |
| STAT1 (-) from -350 to +350 |
- | 9.36 |
| STAT1 (-) from +130 to +350 |
- | 4.22 |
| strong IRF1 (b) from -350 to +350 |
IRF1 (b) from -350 to +350 |
10.0 |
| IRF1 (-) from -350 to +350 |
AP1 (b) from -500 to +1 |
5.4 |
| IRF1 (b) from -650 to +350 |
GATA1 (b) from -600 to +1 |
1.17 |
| IRF1 (b) from -200 to +50 |
NF-κB (b) from -500 to +1 |
6.0 |
| IRF1 (+) from -500 to +1 |
OCT1 (b) from -500 to +1 |
2.0 |
| IRF1 (+) from -350 to +350 |
TATA (+) from -100 to +70 |
5.2 |
| STAT1 (-) from -350 to +350 |
strong IRF1 (b) from -650 to +350 |
10.0 |
| strong STAT1 (-) from -350 to +350 |
STAT1 (-) from -350 to +350 |
20.00 |
| STAT1 (-) from -350 to +350 |
- | 9.36 |
| STAT1 (-) from +130 to +350 |
- | 4.22 |
| strong IRF1 (b) from -350 to +350 |
IRF1 (b) from -350 to +350 |
10.00 |
| STAT1 (b) from -500 to +1 |
strong IRF1 (b) from -650 to +350 |
6.1 |
| STAT1 (b) from -500 to +1 |
ISGF3 (b) from -500 to +1 |
2.1 |
| STAT1 (+) from -350 to +350 |
AP1 (b) from -500 to +1 |
3.8 |
| STAT1 (+) from -300 to +1 |
OCT1 (b) from -500 to +1 |
3.3 |
| STAT1 (b) from -350 to +350 |
NF-κB (b) from -500 to +1 |
4.1 |
| STAT1 (-) from -130 to +350 |
TATA (+) from -100 to +70 |
4.0 |
| STAT1 (b) from -300 to +1 |
TATA (+) from -100 to +70 |
8.0 |
| NF-κB (b) from -500 to +1 |
AP1 (b) from -500 to +1 |
5.4 |
*b (both) - any direction of a site; + forward DNA strand; - reverse DNA strand;
** Location of a site with respect to the TSS