Table 1.
Summary of sRNA sequences used in this study
Wild type | nrpd1a/1b | nrpd2a/2b | F1* | |
---|---|---|---|---|
RAW sequences | 76,772 | 106,905 | 72,604 | 78,293 |
Perfectly matched to genome | 56,170 (73.2%)† | 78,067 (73.0%)† | 49,017 (67.5%)† | 55,070 (70.3%)† |
Filtered out‡ | 404 (0.5%)† | 2,361 (0.2%)† | 1,145 (0.2%)† | 932 (0.1%)† |
miRNAs | 10,408 (18.7%)§ | 54,501 (72.0%)§ | 32,082 (67.0%)§ | 8,416 (15.5%)§ |
tasiRNA | 799 (1.4%)§ | 4,491 (5.9%)§ | 2,561 (5.3%)§ | 959 (1.8%)§ |
siRNAs¶ | 44,559 (79.9%)§ | 16,714 (22.1%)§ | 13,229 (27.6%)§ | 44,763 (82.7%)§ |
*From the cross nrpd1a/1b X nrpd2a/2b.
†As percentage of raw sequences.
‡Matched abundant cellular RNAs such as tRNAs.
§As percentage of perfect matches to the genome and excluding those that were filtered out.
¶May contain unidentified miRNAs and tasiRNAs.