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Analysis of RefSeq and ENSEMBL ENCODE annotation compared with GENCODE
| RefSeq | ENSEMBL | |
| No. (unique) exons | 3,984 | 4,734 |
| No. transcripts | 577 | 738 |
| No. exons overlapping GENCODE exons (%) | 5,118 (98.6%) | 4,469 (94.4%) |
| No. transcripts overlapping GENCODE (%) | 567 (98.3%) | 675 (91.5%) |
| No. GENCODE exons overlapped (total = 8,865) (%) | 7,084 (80.0%) | 7,450 (84.0%) |
| No. GENCODE transcripts overlapped (total = 2,608) (%) | 2,327 (89.2%) | 2,395 (91.8%) |
