Table 2.
Comparison of unique DNA decamer sequences with d(CC)/d(GG) ends and standard nucleotide bases
| Conformation | Sequence* | Space group | Reference |
|---|---|---|---|
| Four-way junction | CCGGTACCGG | C2 | This work |
| CCGGGACCGG | C2 | 3 | |
| B-DNA duplex | CCGCTAGCGG | C2 | This work |
| CCGGCGCCGG | R3 | 25 | |
| CCAGGCCTGG | C2 | 26 | |
| CCGCCGGCGG | R3 | 27 | |
| CCAACGTTGG | C2 | 28 | |
| CCACTAGTGG | P3221 | 29 | |
| CCAAGATTGG | C2 | 30 | |
| CCAAGCTTGG | P6 | 31 | |
| CCATTAATGG | P3221 | 32 |
*
Nucleotides in the ACC core in the junctions and similar nucleotides in other sequences are in boldface, whereas mismatched base pairs are underlined.