Table 5. .
Probe Set A for Haplotyping[Note]
| Position | Purposea | Sequence (5′→3′) |
| 681 | a | TgTAATCTTACTgAgAgCTAAT |
| 681 | b | TgTAATCTTACTAAgAgCTAA |
| 752 | a | CgTgCTTgATgCTTATTCCTTTTgA |
| 856 | a | AAAgTTTAACTAggCTATACTA |
| 1310 | a | CgTCTTTACgTggATACTTgC |
| 1382 | a | ggCTATCgTAgTTgTCTggg |
| 1442 | a | AACTAAgCACTCTATTCTCAgT |
| 1647 | p | AggAgATTTCAACTTAACTTgA |
| 2766 | a | gACCTgTgggTTTATTAggTA |
| 3010 | a | ATCAggACATCCCAATggTg |
| 3010 | b | ATCAggACATCCCgATggT |
| 3027 | a | TgCAgCCgCTATCAAAgg |
| 3458 | p | gCCATAAAACTCTTCACCAA |
| 3496 | a | CCCTAAAACCCTCCACATc |
| 3497 | a | CCTAAAACCCgTCACATC |
| 3644 | a | ggATTgAgTAAgCggCT |
| 3667 | p | TAgTTTgAgTTTgATgCTCA |
| 4048 | a | CTAggAACAACATATAACgCACTC |
| 4071 | a | gACAAAATATgTTgTATAgAgTTC |
| 4071 | b | ACAAAATATgTTgTgTAgAgTTC |
| 4086 | a | AAgTAgggTCTTggTAACAAAATA |
| 4386 | a | ggTgTggTAggTggCAC |
| 4386 | b | gggTgTgATAggTggC |
| 4491 | a | CTggCCCAACCCATCATCTA |
| 4505 | a | gTCATCTACTCTACTATCTTTg |
| 4541 | a | CAgCgCTAAgCTCACACTgA |
| 4833 | a | AggTTACCCAAggCgCCCCT |
| 4895 | a | CCATCTCAATCATgTACCAA |
| 4895 | b | ATCTCAATCATATACCAAATC |
| 5108 | a | TTATCCTAACTACCACCgCA |
| 5147 | a | CTCCAgCACCACAACC |
| 5178 | a | TgAAACAAgATAACATgAC |
| 5178 | b | CTgAAACAAgCTAACATgA |
| 5231 | a | TCCCTAggAggCCTACCCCC |
| 5964 | a | ATgCgCCgAATAgTAggTAT |
| 6023 | a | TggCTggCCCAgTTCggCT |
| 6086 | a | CgTCACAgCCCACgCATTTg |
| 6086 | b | AgATTATTACAAATgCATgggCT |
| 6253 | a | CTCgCATCTgCTACAgTggA |
| 6689 | a | TggTTCTTTTTTTCCAgAgTAgT |
| 6752 | a | CAATTggCTTCCTggggTT |
| 6752 | b | CAATTggCTTCCTAgggTTT |
| 8272 | a | CTCTAgAgggggTAgAggTggTgCT |
| 8272 | b | TgggCTCTAgAggTggTgCTAT |
| 8392 | a | gTAATTATggTgggTCATACg |
| 8684 | a | ATCATTTgTTTTgAgATTAgTTT |
| 8701 | b | AgTgTTgTgTATggTTATCAT |
| 8731 | p | TgATTAAggATACTAgTATAAgAg |
| 8784 | a | TAACCTCCTCgggCTCCTgC |
| 8793 | a | CggACTCCTgCCCCACTCA |
| 8794 | a | TggTgTAAATgAgTAAggCAgg |
| 8829 | a | CAACTATCTATAAATCTAgCC |
| 9123 | a | gATTTCTAggATAgTTAgTAgAAT |
| 8794 | a | TggTgTAAATgAgTAAggCAgg |
| 8829 | a | CAACTATCTATAAATCTAgCC |
| 9123 | a | gATTTCTAggATAgTTAgTAgAAT |
| 9219 | p | ATCACATgCCTATCATATAgTA |
| 9296 | a | CTAATgACCTCCggTCTAgCC |
| 9755 | a | TCAgAgTACTTCgAATCTCCC |
| 9774 | p | ATgCCgTCggAAATggTgA |
| 9950 | a | ATTTTgTAgATgTggTCTgACTA |
| 10310 | a | ACTATTAgTggTAggTTAgTT |
| 10397 | a | TACCAATTCAgCCCAgTCTAAT |
| 10400 | m | ACTATATACCAATTCAgCTCAgT |
| 10400 | n | ACTATATACCAATTCggTTCAgT |
| 11084 | a | gTggCTgTgAATgCTATAATTA |
| 11215 | a | TACTTCCTATTCTATACCCTAg |
| 11215 | b | TACTTCCTATTCTACACCC |
| 11963 | a | AggACTCAACATACTAATCACA |
| 12063 | p | ACCCTCATgTTCATACACCT |
| 12501 | a | CAACAATATTCATATgCCTAg |
| 12501 | b | ACAACAATATTCATgTgCCT |
| 12705 | a | CTACTCATTTTCCTAATTACCA |
| 12775 | p | TAggAATTATATCCTTCTTgC |
| 12811 | a | TCATCAgTTgATgACACgCCC |
| 13105 | a | ATgAgTAAgAAgACTCCTgC |
| 13143 | a | TggATTAgTgggCTgTTTTC |
| 13156 | p | CTAAgCATAgTgTTAgAgTTTg |
| 13263 | a | TATTATgAgTCCTAgCTgACTTg |
| 13563 | a | gCCTgAgCCCTgTCTAT |
| 13928 | a | ggATTCTACCCTACCATCA |
| 13928 | b | gATTCTACCCTAgCATCA |
| 14343 | p | gTgggTgAAAgAgTATgATg |
| 14476 | a | CTgTAgTATATCCAAAAACAACC |
| 14893 | a | TgCATggCTAggAACAgTCCT |
| 14893 | b | gCATggCTAggAATAgTCC |
| 14927 | a | ATgAAAAggCggCTgAgg |
| 14944 | a | gAgTgATgTgggCAATTgAT |
| 14979 | a | AAggTAgCggATggTTCAgC |
| 15067 | a | TATATTACggATCATTCCTCTAC |
| 15346 | a | CACCTCCTATTCTTACACgAAA |
| 15440 | a | ACgCCCTCggCCTACTTCT |
| 15487 | a | TATTCTCACCTgACCTCCT |
| 15497 | a | CCAgACCTCCTAAgCgAC |
| 15524 | a | TTATACCCTAgCCgACC |
| 15535 | a | CCAACCCCTTAAATACCCCTC |
| 15535 | b | AACCCCTTAAACACCCCTCC |
| 15826 | p | gTTggTATTAggATTAggATTgTT |
| 15860 | a | gAgTATTTTgTTTTCAACTAgggA |
| 15874 | a | AggCCCATTTgAgCATTTTgTT |
| 15924 | a | gTTTTCATCTCCggCTTACAAg |
| 16519 | a | TTCCTACTTCAgggCCATAAAg |
| 16519 | b | TCCTACTTCAgggTCATAAAgC |
Note.— Probes used for the first set of hybridization.
a
Purposes for probes are as follows: a, for detecting polymorphism; b, for detecting wild type; p, for verifying PCR product; m, for detecting macrohaplogroup M; and n, for detecting macrohaplogroup N.