Table 1.
SSR markers with a low recombination rate on the IBM genetic map, using the physical map to redefine their order
Bin | Map coordinate | SSR markers | GenBank Accession # | Contigs hit (#of BACs hit within contig) |
1.05 | 467.0* | p-umc1906 | B68068 | 33(3) |
467.9 | p-umc1903 | G68065 | 33 (6) | |
3.04 | 190.6 | p-bnlg1019 | - | 116(5) |
190.8 | p-umc1717 | AW573521 | 117 (1) | |
190.8* | p-bnlg1452 | - | 116 (2) | |
190.8* | p-bnlg1113 | - | 117 (4) | |
191.1 | p-umc1655 | AZ916071 | 116 (5) | |
5.06 | 492.6 | p-umc1941 | - | 250(4) |
493.5* | p-umc1680 | AW261378 | 250 (1) | |
493.5* | p-umc1524 | AQ844589 | 249 (2) | |
493.7 | p-phi087 | - | 250 (4) | |
500.1* | p-umc2306 | BI431083 | 250 (4) | |
500.7* | p-bnlg609 | - | 250 (7) | |
6.04 | 181.9* | p-umc65 | G10860 | 276 (2) |
189.5* | p-umc1796 | AW562820 | b0218P06a | |
189.9 | p-umc1918 | G68080 | 276 (5) | |
7.03 | 405.5* | p-umc1301 | AI947719 | 322 (7) |
405.5* | p-umc1936 | G68098 | 322 (2) |
ap-umc1796 identified a single BAC clone, b0218P06. This clone was not fingerprinted and thus not displayed in WebFPC data. * on-frame position on the map.