TABLE 2.
ADAR substrates with editing sites in noncoding sequencesa
| Cell type | RNAb (Wormbase ID or Accession #) | Base-pairing |
|---|---|---|
| C. elegansc | M05B5.3 | 5′ UTRd |
| 52G (F55A4.9) | Noncoding | |
| pop-1 (W10C8.2) | 3′ UTR | |
| 9A (ZC239.6) | 3′ UTR | |
| 16G (Y6D11A.1) | 3′ UTR | |
| Syntaxin (F56A8.7a) | 3′ UTR | |
| Laminin-γ (C54D1.5) | 3′ UTR | |
| 36A (C35E7.6) | 3′ UTR | |
| SSADH (F45H10.1) | 3′ UTR | |
| 12A (D2024.3) | 3′ UTR | |
| H. sapiense | CDK8-like (Z84480) | Intron |
| NrCAM (AF172277) | Intron | |
| PDE8A (AF056490) | Intron | |
| Ubiquitin hydrolase-like (AK001647) | Intron | |
| HsC7-I, proteasome subunit (D26599) | 3′ UTR | |
| NADH-dehydrogenase (BC007323) | 3′ UTR | |
| Tankyrase (AF082557) | 3′ UTR | |
| PP2C-β (AF294792) | Intron | |
| PAR-SN (U55937) | Noncoding |
a
Data derived from (45; L.A. Tonkin et al. and D.P. Morse et al., unpublished data).
b
For mRNAs of unknown function, substrates are designated as described (45; D. P. Morse et al., unpublished data).
c
Whole worms, all developmental stages.
d
UTR, untranslated region
e
Brain