TABLE 1.
Parameter | Result for peptide
|
|||
---|---|---|---|---|
J1 | J1cc | J3 | J7 | |
No. of distance restraints | 220 | 202 | 125 | 167 |
Intraresidue (i = j) | 54 | 95 | 37 | 43 |
Sequential (|i − j| = 1) | 104 | 72 | 69 | 105 |
Medium range (1 < |i − j| < 5) | 59 | 32 | 19 | 19 |
Long range (|i − j| > 4) | 3 | 3 | 0 | 0 |
Hydrogen bond restraints | 0 | 0 | 0 | 0 |
No. of dihedral restraints | 16 | 15 | 11 | 17 |
Energiesa | ||||
Mean ENOE (kcal mol−1) ± SD | 4.4 ± 1.0 | 8.0 ± 2.2 | 0.7 ± 0.6 | 3.8 ± 0.9 |
Mean RMS deviations from expt data ± SD | ||||
NOEs (Å) | 0.020 ± 0.002 | 0.028 ± 0.004 | 0.011 ± 0.002 | 0.021 ± 0.002 |
Dihedrals (°) | 0.605 ± 0.357 | 0.094 ± 0.137 | 0.157 ± 0.266 | 0.018 ± 0.049 |
Mean deviations from ideal ± SDb | ||||
Angles (°) | 0.71 ± 0.04 | 0.72 ± 0.05 | 0.67 ± 0.04 | 0.58 ± 0.01 |
Bonds (Å) | 0.0052 ± 0.0003 | 0.0048 ± 0.0003 | 0.0045 ± 0.0007 | 0.0022 ± 0.0001 |
Impropers (°) | 0.45 ± 0.03 | 0.46 ± 0.05 | 0.44 ± 0.04 | 0.40 ± 0.01 |
RMS deviations (Å)c | ||||
Backbone atoms (global) | >2 | >2 | >2 | >2 |
Backbone atoms [S(φ) and S(ψ) > 0.8] | 0.93 | 1.61 | ||
Ramachandran plotd | ||||
Most favored (%) | 44.7 | 51.8 | 46.1 | 35.6 |
Allowed (%) | 48.7 | 45.4 | 48.9 | 58.1 |
Additionally allowed (%) | 6.7 | 2.9 | 5.0 | 6.2 |
Disallowed (%) | 0 | 0 | 0 | 0 |
The values for ENOE are calculated from a square well potential with force constants of 50 kcal mol−1 Å2.
The values for the bonds, angles, and impropers show the deviations from ideal values based on perfect stereochemistry.
The RMSD over the backbone heavy atoms (N, Cα, C) over the indicated residues.
As determined by the program PROCHECK-NMR for all residues.