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. 2006 Oct 23;75(1):61–73. doi: 10.1128/IAI.01041-06

TABLE 1.

Summary of experimental constraints and structural statistics for the peptides J1, J1cc, J3, and J7

Parameter Result for peptide
J1 J1cc J3 J7
No. of distance restraints 220 202 125 167
    Intraresidue (i = j) 54 95 37 43
    Sequential (|ij| = 1) 104 72 69 105
    Medium range (1 < |ij| < 5) 59 32 19 19
    Long range (|ij| > 4) 3 3 0 0
    Hydrogen bond restraints 0 0 0 0
No. of dihedral restraints 16 15 11 17
Energiesa
    Mean ENOE (kcal mol−1) ± SD 4.4 ± 1.0 8.0 ± 2.2 0.7 ± 0.6 3.8 ± 0.9
Mean RMS deviations from expt data ± SD
    NOEs (Å) 0.020 ± 0.002 0.028 ± 0.004 0.011 ± 0.002 0.021 ± 0.002
    Dihedrals (°) 0.605 ± 0.357 0.094 ± 0.137 0.157 ± 0.266 0.018 ± 0.049
Mean deviations from ideal ± SDb
    Angles (°) 0.71 ± 0.04 0.72 ± 0.05 0.67 ± 0.04 0.58 ± 0.01
    Bonds (Å) 0.0052 ± 0.0003 0.0048 ± 0.0003 0.0045 ± 0.0007 0.0022 ± 0.0001
    Impropers (°) 0.45 ± 0.03 0.46 ± 0.05 0.44 ± 0.04 0.40 ± 0.01
RMS deviations (Å)c
    Backbone atoms (global) >2 >2 >2 >2
    Backbone atoms [S(φ) and S(ψ) > 0.8] 0.93 1.61
Ramachandran plotd
    Most favored (%) 44.7 51.8 46.1 35.6
    Allowed (%) 48.7 45.4 48.9 58.1
    Additionally allowed (%) 6.7 2.9 5.0 6.2
    Disallowed (%) 0 0 0 0
a

The values for ENOE are calculated from a square well potential with force constants of 50 kcal mol−1 Å2.

b

The values for the bonds, angles, and impropers show the deviations from ideal values based on perfect stereochemistry.

c

The RMSD over the backbone heavy atoms (N, Cα, C) over the indicated residues.

d

As determined by the program PROCHECK-NMR for all residues.