Table 1.

Associated P-values and AUC for some of the most significant QTL reported by Chesler et al.(2005)

	Best markera			Best transcriptb			AUC50(%) c
	Name	-log10 P-valued	AUC%	Name	-log 10 P-valued	AUC%	Marker	Transcript	All
Trans-QTL
Mela	D9Mit196	23	72	Cap1	6	65	76	88	93
Myoc	D2Mit237	14	71	Pam	7	66	77	88	91
Cd59a	D13Mit11	12	72	A08Rik	11	57	74	89	89
Myh9	D19Mit35	5	61	Igfbp5	18	91	71	89	91
Pitpnb	S14Gnf055.010	6	63	Rab7	20	77	71	88	88
Cis-QTL
Prdx2	S08Gnf094.275	15	71	Psma7	20	74	69	94	94
Kcnj9	D9Mit11	7	62	Tnp1	24	77	62	95	96
Krt1-12	D11Mit58	13	70	Mrps7	10	71	73	89	89
Ntan1	D12Nyu7	5	57	K22Rik	39	80	63	84	85
Mrpl48	D7Mit17	11	73	Mcee	23	67	77	90	91
Largest-clique
Lin7c	D12Mit84	5	62	Sacm1l	53	90	80	97	97

a The marker shown is the most associated to the cDNA level of the gene in the first column.

^b The gene name shown is that whose cDNA level is most associated to the cDNA level of the gene in the first column.

^c AUC50 is the AUC obtained with the best 50 variables, the three columns refer to AUC obtained when only markers, only transcripts or all variables, respectively, are considered as predictors.

^d Values reported are -log₁₀ (P-value), that is a value of x means that significance is 10^-x.