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. 2007 Jan 12;73(6):1940–1951. doi: 10.1128/AEM.02520-06

TABLE 2.

Identification of DNA bands from Fig. 5 based upon a partial 16S rRNA sequencea

Band no. DNA source Closest relative (database accession no.) Alignment (bp) Similarityb (%) Taxonomic description
1 Live phyllosoma Vibrio corallilyticus, strain LMG 21349 (AJ440004.1) 327/327 100 Gammaproteobacteria
2 Live phyllosoma Vibrio harveyi, strain LB4 (DQ146935.1) 332/334 99 Gammaproteobacteria
3 Live phyllosoma Vibrio campbellii, strain 90-69B3 (AY738129.1) 323/325 99 Gammaproteobacteria
4 Live phyllosoma Rhodobacteraceae bacterium 183, strain 183 (AJ810844.1) 158/163 96 Alphaproteobacteria
5 Live phyllosoma Saprospira sp., strain SS03-4 (AB191040.1) 203/222 91 Sphingobacteria
6 Live phyllosoma Roseivivax sp. strain NT N52 (AB166990.1) 165/169 97 Alphaproteobacteria
7 Live phyllosoma Methylobacter marinus A45 (AF304197.1) 252/265 95 Gammaproteobacteria
8 Live phyllosoma Vibrio natriegens, strain 01/252 (AJ874353.1) 315/315 100 Gammaproteobacteria
9 Live phyllosoma Vibrio harveyi, strain S35 (AY750578.1) 321/321 100 Gammaproteobacteria
10 Live phyllosoma Uncultured Thiothrix sp. clone UP23b (AY426613.1) 308/315 97 Gammaproteobacteria
11 Live phyllosoma Saprospira sp. SS03-4 (AB191040.1) 246/264 93 Sphingobacteria
12 Live phyllosoma Vibrio olivaceus (AY827492.1) 71/73 97 Gammaproteobacteria
13 Live phyllosoma Vibrio hispanicus, strain LMG 13213 (AY254042.2) 256/269 95 Gammaproteobacteria
14 Dead phyllosoma Flexibacter echinicida, strain F11 (AY006470.1) 315/315 100 Sphingobacteria
15 Dead phyllosoma Vibrio vulnificus (AY264936.1) 184/198 92 Gammaproteobacteria
16 Dead phyllosoma Vibrio proteolyticus (AF513463.1) 323/323 100 Gammaproteobacteria
17 Dead phyllosoma Vibrio shilonii strain MP-3 (AY911392.1) 285/300 95 Gammaproteobacteria
18 Dead phyllosoma Vibrio vulnificus, strain 1003(O) (AY676129.1) 193/202 95 Gammaproteobacteria
19 Dead phyllosoma Psychroserpens mesophilus, strain KOPRI 13650 (DQ001321.1) 301/315 95 Flavobacteria
20 Dead phyllosoma Vibrio harveyi, strain LB4 (DQ146935.1) 315/315 100 Gammaproteobacteria
a

Bands marked X in Fig. 5 did not sequence well and, as such, potential identifications were not provided.

b

Sequences were aligned to the closest relative by using BLAST (3). The similarity was calculated with gaps not taken into account.