TABLE 6.
Influenza virus strain and lineage identification using RPM v.1
| Sample ID | Collection date | Representative strain identification (GenBank accession no. of HA gene)a | Lineageb |
|---|---|---|---|
| 10499 | 30 Sept. 1999 | A/Charlottesville/10/99 (H3N2) (AF297094) | A/Panama/2007/99 |
| 41394 | 5 Jan. 2000 | A/Sydney/5/97 (H3N2) (AF180584) | A/Panama/2007/99 |
| 10552 | 11 Jan. 2000 | A/France/2/00 (H3N2) (AY633997) | A/Panama/2007/99 |
| 30491 | 13 Jan. 2000 | A/New York/397/1999 (H3N2) (CY006163) | A/Panama/2007/99 |
| 39002 | 12 Jan. 2001 | A/Podgorica/4011/2001 (H1N1) (AJ457863) | A/New Caledonia/20/99 |
| 70246 | 5 Feb. 2001 | A/Madrid/1082/2001 (H1N1) (AJ457886)* | A/New Caledonia/20/99 |
| 50833 | 24 Jan. 2002 | A/New York/110/2002 (H3N2) (CY000113) | A/Panama/2007/99 |
| 61596 | 2 Feb. 2002 | A/Buenos Aires/722/01 (H3N2) (AF534056) | A/Panama/2007/99 |
| 20694 | 7 Mar. 2002 | A/New York/101/2002 (H3N2) (CY001104)* | A/Panama/2007/99 |
| 31844 | 12 Nov. 2003 | A/New York/41/2003 (H3N2) (CY000153)* | A/Fujian/411/2002 |
| 70793 | 21 Nov. 2003 | A/New York/18/2003 (H3N2) (CY001061)* | A/Fujian/411/2002 |
| 51672 | 1 Dec. 2003 | A/New York/28/2003 (H3N2) (CY000009) | A/Fujian/411/2002 |
| 43269 | 1 Dec. 2003 | A/New York/28/2003 (H3N2) (CY000009)* | A/Fujian/411/2002 |
| 51673 | 1 Dec. 2003 | A/New York/43/2003 (H3N2) (CY000169)* | A/Fujian/411/2002 |
| 62416 | 16 Dec. 2003 | A/New York/51/2003 (H3N2) (CY001064)* | A/Fujian/411/2002 |
| 90781 | 17 Dec. 2003 | A/New York/41/2003 (H3N2) (CY000153)* | A/Fujian/411/2002 |
| 48930 | 12 Jan. 2004 | A/Finland/305/2003 (H3N2) (DQ167271) | A/Fujian/411/2002 |
| 48934 | 13 Jan. 2004 | A/New York/34/2003 (H3N2) (CY0000431) | A/Fujian/411/2002 |
| 32323 | 18 Jan. 2005 | A/Cheju/311/2002 (H3N2) (AY589649) | A/Fujian/411/2002 |
| 32327 | 20 Jan. 2005 | A/New York/464/2005 (H3N2) (CY003648) | A/California/7/2004 |
| 49370 | 24 Jan. 2005 | A/New York/378/2005 (H3N2) (CY002016) | A/California/7/2004 |
| 52067 | 5 Jan. 2005 | A/New York/244/2005 (H3N2) (CY002080)* | A/California/7/2004 |
| 32329 | 21 Jan. 2005 | A/New York/386/2004 (H3N2) (CY002040) | A/California/7/2004 |
| 49369 | 22 Jan. 2005 | A/New York/387/2004 (H3N2) (CY002048) | A/California/7/2004 |
| 49376 | 1 Feb. 2005 | A/New York/461/2005 (H3N2) (CY006076) | A/California/7/2004 |
| 49377 | 2 Feb. 2005 | A/New York/372/2004 (H3N2) (CY002224)* | A/California/7/2004 |
| 49378 | 2 Feb. 2005 | A/New York/359/2005 (H3N2) (CY002000) | A/California/7/2004 |
| 62818 | 3 Feb. 2005 | A/New York/359/2005 (H3N2) (CY002000) | A/California/7/2004 |
| 52082 | 5 Feb. 2005 | A (H3N2) | ND |
| 32349 | 14 Feb. 2005 | A/New York/379/2004 (H3N2) (CY002026)* | A/California/7/2004 |
| 52087 | 15 Feb. 2005 | A/Aichi/143/2005 (H3N2) (AB243872) | A/California/7/2004 |
| 52089 | 16 Feb. 2005 | A/New York/396/2005 (H3N2) (CY002072) | A/California/7/2004 |
| 49417 | 24 Feb. 2005 | A/New York/373/2005 (H3N2) (CY002456)* | A/California/7/2004 |
| 52095 | 25 Feb. 2005 | A/Finland/170/03 (H3N2) (AY661032) | A/Fujian/411/2002 |
| 52096 | 26 Feb. 2005 | A/Finland/170/03 (H3N2) (AY661032) | A/Fujian/411/2002 |
| 52099 | 28 Feb. 2005 | A/Canterbury/67/2005 (H3N2) (CY008059) | A/California/7/2004 |
| 49428 | 28 Feb. 2005 | A/New York/382/2005 (H3N2) (CY002032)* | A/California/7/2004 |
| 49432 | 1 Mar. 2005 | A/New York/373/2005 (H3N2) (CY002456)* | A/California/7/2004 |
| 49449 | 7 Mar. 2005 | A (H3N2) | ND |
a
*, only a single strain was identified.
b
ND, not detected.