TABLE 1.
PFGE subtype discrimination among L. monocytogenes ribotypes
Lineage | Ribotype(s) | No. of isolates | No. of PFGE types |
---|---|---|---|
I | 116-239-S-2 | 7 | 3 |
DUP-1038B | 40 | 18 | |
DUP-1042A | 6 | 6 | |
DUP-1042B | 48 | 34 | |
DUP-1042C | 7 | 5 | |
DUP-1043A | 6 | 5 | |
DUP-1044A | 32 | 8 | |
DUP-1044B | 18 | 11 | |
DUP-1052A | 21 | 16 | |
Ribotypes with <5 occurrences | 25 | 23 | |
Total for lineage I | 210 | 129 | |
II | DUP-1023A | 5 | 5 |
DUP-1030A | 8 | 8 | |
DUP-1030B | 13 | 7 | |
DUP-1039A | 13 | 11 | |
DUP-1039B | 6 | 2 | |
DUP-1039C | 66 | 41 | |
DUP-1039D | 10 | 2 | |
DUP-1039E | 27 | 16 | |
DUP-1045A | 16 | 9 | |
DUP-1045B | 19 | 13 | |
DUP-1045D | 9 | 7 | |
DUP-1053A | 6 | 4 | |
DUP-1054A | 6 | 5 | |
DUP-1062A | 11 | 3 | |
DUP-1062E | 7 | 4 | |
Ribotypes with <5 occurrences | 48 | 43 | |
Total for lineage II | 270 | 180 | |
III | DUP-18606 | 5 | 2 |
Ribotypes with <5 occurrences | 4 | 4 | |
Total for lineage III | 9 | 6 | |
Unknown | Ribotypes with <5 occurrences | 6 | 6 |
Total for all lineages | 495 | NAa |
NA, not applicable. Eleven PFGE types were further discriminated by ribotyping; the total for this column should thus be 321 even though only 310 PFGE types were differentiated among the 495 isolates