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. 2007 Jan 3;45(3):881–886. doi: 10.1128/JCM.02245-06

TABLE 1.

P. jirovecii ITS haplotypes detected in PCR-amplified respiratory specimens of P. jirovecii-infected individualsa

Haplotype(s)b No. of specimens No. of clonesc Found as single-type infection
Eg 28 106 Yes
Ne 10 61 Yes
Bi, Eb 9 44, 38 Yes
Ai 6 24 Yes
Ea, Ec, Jf 5 23, 15, 24 Yes
Iv 4 17 Yes
Be, Ef, Ei, Ig, Ji 2 2-3 No
Af, Bg, Ce, Cg, Ci, Db, E100B, Ee, Eh, Eo, Ep, E6, Ev, Gg, Ja, Jc, Jg, Kc, Kf, Kg, Ki, Nf, Ng, Nh, Ni, Nj, No 1 1-3 No
Total (41 haplotypes) 64 408
a

Genotyping at the ITS1-5.8S-ITS2 locus of the rDNA was performed as described by Lee et al. (8).

b

Combination of ITS1 and ITS2.

c

Five to 13 clones were sequenced per specimen.