TABLE 2.
Comparison of the nucleotide and deduced amino acid sequence identities of the VP7 gene from equine strains with that from strains representing the established 15 G serotypes/genotypesa
| Strain | Species | G serotype | % Sequence identity
|
|||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Erv92/Erv99
|
Erv80
|
Erv105
|
Erv2/Erv28
|
|||||||
| nt | aa | nt | aa | nt | aa | nt | aa | |||
| Wa | Human | 1 | 73.9 | 80.7 | 76.6 | 81.3 | 76.2 | 81.9 | 74.4 | 77.9 |
| HU5 | Human | 2 | 73.9 | 74.5 | 74.6 | 74.8 | 75.4 | 74.5 | 72.5 | 73.9 |
| SA11 | Simian | 3 | 76.7 | 85.3 | 82.4 | 95.4 | 83.1 | 95.4 | 77.5 | 84.4 |
| Hochi | Human | 4 | 74.2 | 76.1 | 75.4 | 77.9 | 75.9 | 77.0 | 72.7 | 75.2 |
| OSU | Porcine | 5 | 75.6 | 81.6 | 78.6 | 85.0 | 77.6 | 85.0 | 74.6 | 80.7 |
| NCDV | Bovine | 6 | 75.9 | 83.1 | 76.5 | 84.0 | 77.0 | 84.4 | 74.3 | 80.7 |
| Ch2 | Avian | 7 | 63.1 | 59.5 | 65.8 | 61.4 | 66.2 | 59.8 | 65.5 | 62.1 |
| R291 | Human | 8 | 76.6 | 81.0 | 75.6 | 82.2 | 76.2 | 81.6 | 74.7 | 80.7 |
| BA201 | Human | 9 | 74.8 | 82.8 | 79.6 | 89.0 | 80.1 | 88.0 | 77.2 | 82.8 |
| B223 | Bovine | 10 | 75.8 | 82.5 | 77.5 | 83.4 | 78.1 | 85.0 | 86.4 | 96.3 |
| YM | Porcine | 11 | 75.1 | 82.2 | 78.7 | 88.3 | 79.0 | 87.4 | 74.2 | 81.6 |
| L26 | Human | 12 | 75.5 | 77.9 | 75.9 | 80.7 | 77.0 | 80.4 | 72.9 | 78.5 |
| L338 | Equine | 13 | 75.4 | 77.9 | 78.0 | 83.1 | 78.9 | 82.4 | 75.0 | 76.5 |
| JE91 | Equine | 14 | 76.1 | 79.8 | 84.0 | 88.3 | 84.7 | 88.7 | 75.6 | 79.1 |
| Hg18 | Bovine | 15 | 75.2 | 77.3 | 75.0 | 79.1 | 74.1 | 78.5 | 73.3 | 77.2 |
a
Erv2/Erv28, Erv80/Erv105, and Erv92/Erv99 represent E1, E2, and E4, respectively.